Abstract

For the quantitative understanding of complex chemical reaction mechanisms, it is, in general, necessary to accurately determine the corresponding free energy surface and to solve the resulting continuous-time reaction rate equations for a continuous state space. For a general (complex) reaction network, it is computationally hard to fulfill these two requirements. However, it is possible to approximately address these challenges in a physically consistent way. On the one hand, it may be sufficient to consider approximate free energies if a reliable uncertainty measure can be provided. On the other hand, a highly resolved time evolution may not be necessary to still determine quantitative fluxes in a reaction network if one is interested in specific time scales. In this paper, we present discrete-time kinetic simulations in discrete state space taking free energy uncertainties into account. The method builds upon thermo-chemical data obtained from electronic structure calculations in a condensed-phase model. Our kinetic approach supports the analysis of general reaction networks spanning multiple time scales, which is here demonstrated for the example of the formose reaction. An important application of our approach is the detection of regions in a reaction network which require further investigation, given the uncertainties introduced by both approximate electronic structure methods and kinetic models. Such cases can then be studied in greater detail with more sophisticated first-principles calculations and kinetic simulations.

Highlights

  • Complex reaction networks underlie chemical reactions that involve reactive species, harsh reaction conditions, or non-innocent solvents

  • For processes on a well-structured potential energy surface with non-shallow minima, explicit dynamics may suffer from sampling problems and is o en replaced by kinetic models that eventually allow one to access long time and length scales beyond the reach of explicit dynamical approaches.[8]

  • We showed by employing a time-scale separation approach based on Computational Singular Perturbation[99,100] how the frequently occuring stiffness in kinetic simulations can be circumvented

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Summary

Introduction

Complex reaction networks underlie chemical reactions that involve reactive species, harsh reaction conditions, or non-innocent solvents (or a combination of all). To illustrate this point, we consider two examples. The dynamics on a rugged energy landscape will demand advanced sampling methods from molecular dynamics or Monte Carlo simulations rather than a standard quantum chemical approach that considers only a few selected stationary points on that surface.[6,7] On the other hand, for processes on a well-structured potential energy surface with non-shallow minima, explicit dynamics may suffer from sampling problems and is o en replaced by kinetic models that eventually allow one to access long time and length scales beyond the reach of explicit dynamical approaches.[8]

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