Étude taxonomiquede bactéries azotofixatrices libres isolées de l'endorhizosphère du riz

Abstract

Summary Twenty strains of free-living N2-fixing bacteria, isolated from theendorhizosphere of rice in rice soils of Senegal, were studied on the basis of 259 morphological, physiological, biochemical and nutritional characters. Half of them were Gram-negative small rods with polar flagella and showing a strictly respiratory metabolism; they were characteristic of the genus Pseudomonas. A first group of 6 strains was related to the P. cepacia-P. marginata group characterized by lophotrichous flagella; they accumulated polyhydroxybutyrate, assimilated arginine and betaine, grew at 41°C and showed a wide nutritional spectrum with DNA GC % of 67–68. The second group of 4 strains was related to the P. lemoignei group because of (a) its monotrichous flagella, (b) poly-β-hydroxybutyrate accumulation, (c) failure to assimilate arginine and betaine and to grow at 41°C, (d) lack of arginine dihydrolase and (e) its narrow nutritional spectrum. DNA GC % was 65. These 4 strains were also denitrifying bacteria. Six strains were related to the genus Alcaligenes because of their strictly respiratory metabolism and their peritrichous flagella; their nutritional spectrum was variable and one of them was a denitrifier. DNA GC % was 68. One strain was related to Aeromonas hydrophila of the Vibrionaceae family; it consisted of Gram-negative and oxidase-positive small rods with monotrichous polar flagella and respiratory and fermentative metabolism without gas evolution. This strain essentially assimilated sugars and its DNA GC % was 63. Another strain was a Gram- and oxidase-negative small rod with peritrichousflagella and respiratory and fermentative metabolism with gas evolution. Sugars, organic acids and amino acids were assimilated. The DNA GC % was 53. This strain was related to Enterobacter cloacae of the Enterobacteriaceae family, but it showed the additional faculty of denitrification. The last two strains studied were spirilla with amphitrichous flagella characteristic of the genus Aquaspirillum. They showed a strictly respiratory metabolism and a DNA CG % of 60–64. This study allowed us to show the N2-fixing capacity of species of Pseudomonas, Alcaligenes and Aeromonas which had been devoid of N2-fixing bacteria until this time. All strains studied were microaerophilic for N2 fixation.