Abstract

Natural killer (NK) cells are the predominant antiviral cells of the innate immune system, and may play an important role in acquisition and disease progression of HIV. While untreated HIV infection is associated with distinct alterations in the peripheral blood NK cell repertoire, less is known about how NK phenotype is altered in the setting of long-term viral suppression with antiretroviral therapy (ART), as well as how NK memory can impact functional responses. As such, we sought to identify changes in NK cell phenotype and function using high-dimensional mass cytometry to simultaneously analyze both surface and functional marker expression of peripheral blood NK cells in a cohort of ART-suppressed, HIV+ patients and HIV- healthy controls. We found that the NK cell repertoire following IL-2 treatment was altered in individuals with treated HIV infection compared to healthy controls, with increased expression of markers including NKG2C and CD2, and decreased expression of CD244 and NKp30. Using co-culture assays with autologous, in vitro HIV-infected CD4 T cells, we identified a subset of NK cells with enhanced responsiveness to HIV-1-infected cells, but no differences in the magnitude of anti-HIV NK cell responses between the HIV+ and HIV− groups. In addition, by profiling of NK cell receptors on responding cells, we found similar phenotypes of HIV-responsive NK cell subsets in both groups. Lastly, we identified clusters of NK cells that are altered in individuals with treated HIV infection compared to healthy controls, but found that these clusters are distinct from those that respond to HIV in vitro. As such, we conclude that while chronic, treated HIV infection induces a reshaping of the IL-2-stimulated peripheral blood NK cell repertoire, it does so in a way that does not make the repertoire more HIV-specific.

Highlights

  • Natural killer (NK) cells are critical effector cells of the innate immune system that can rapidly recognize and kill virally infected and tumor cells

  • IL-2 activated NK cells, the markers NKG2C, CD2, NKp46, and PD-1 were predictive of HIV+ (95% confidence interval does not contain the zero value) while CD244, NKp30, DNAM-1, and NKG2A were predictive of HIV− individuals (Figure 1B)

  • To better understand how these changes occur in the setting of virological control with antiretroviral therapy (ART), as well as how HIV-specific function is impacted in this setting, we used mass cytometry to profile differences in NK cell receptor expression repertoire in peripheral blood NK cells between ART-treated, HIV+ individuals and healthy HIV- controls

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Summary

Introduction

Natural killer (NK) cells are critical effector cells of the innate immune system that can rapidly recognize and kill virally infected and tumor cells. NK cells express an array of activating and inhibitory receptors; the integration of signaling between these receptors determines NK cell activation and functional activity. This includes the release of cytolytic granules to induce target cell. Epidemiological and experimental evidence have highlighted the role of NK cells in the acquisition and disease progression of HIV-1. The expression of the NK cell receptor KIR3DL1 and its cognate ligand HLABw4-80I is associated with slower disease progression and improved suppression of autologous HIV-infected CD4 T cells [3,4,5]. NKG2A-expressing NK cells have improved activity against HIV [6,7,8], and NKG2D ligands are upregulated on HIV-infected cells [9]. Changes in expression of NK cell receptors can impact their ability to target HIV

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