Abstract

Plant genomes sustain various forms of DNA damage that stall replication forks. Translesion synthesis (TLS) is one of the pathways to overcome stalled replication in which specific polymerases (TLS polymerase) perform bypass synthesis across DNA damage. This article gives a brief overview of plant TLS polymerases. In Arabidopsis, DNA polymerase (Pol) ζ, η, κ, θ, and λ and Reversionless1 (Rev1) are shown to be involved in the TLS. For example, AtPolη bypasses ultraviolet (UV)-induced cyclobutane pyrimidine dimers in vitro. Disruption of AtPolζ or AtPolη increases root stem cell death after UV irradiation. These results suggest that AtPolζ and ATPolη bypass UV-induced damage, prevent replication arrest, and allow damaged cells to survive and grow. In general, TLS polymerases have low fidelity and often induce mutations. Accordingly, disruption of AtPolζ or AtRev1 reduces somatic mutation frequency, whereas disruption of AtPolη elevates it, suggesting that plants have both mutagenic and less mutagenic TLS activities. The stalled replication fork can be resolved by a strand switch pathway involving a DNA helicase Rad5. Disruption of both AtPolζ and AtRAD5a shows synergistic or additive effects in the sensitivity to DNA-damaging agents. Moreover, AtPolζ or AtRev1 disruption elevates homologous recombination frequencies in somatic tissues. These results suggest that the Rad5-dependent pathway and TLS are parallel. Plants grown in the presence of heat shock protein 90 (HSP90) inhibitor showed lower mutation frequencies, suggesting that HSP90 regulates mutagenic TLS in plants. Hypersensitivities of TLS-deficient plants to γ-ray and/or crosslink damage suggest that plant TLS polymerases have multiple roles, as reported in other organisms.

Highlights

  • Accurate replication of genomic DNA is vital for maintaining genome integrity

  • Y carries the largest number of Translesion synthesis (TLS) polymerases, including E. coli Pol IV and V; eukaryotic polymerase η (Polη), Polκ, Polι; and Rev1 (Ohmori et al, 2001)

  • That is, when the proliferating cell nuclear antigen (PCNA) is monoubiquitinated, the replicase detaches from PCNA and TLS polymerases are recruited to the replication site to perform the bypass of damaged DNA, whereas polyubiquitinated PCNA leads to the strand switch pathway

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Summary

Introduction

Accurate replication of genomic DNA is vital for maintaining genome integrity. genomic DNA sustains various forms of damage caused by internal and external agents. TLS polymerase, carrying a flexible active site, replaces the replicase and inserts one or more nucleotide(s) opposite the damage. Arabidopsis has homologs of two prokaryotic-type DNA polymerases, PolI-like A and B (Parent et al, 2011), as well as AtPolθ, which was originally isolated as the causative gene of the short-root mutant tebichi (Inagaki et al, 2006).

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