Abstract
BackgroundPotassium (K+) is an important nutrient ion in plant cells and plays crucial roles in many plant physiological and developmental processes. In the natural environment, K+ deficiency is a common abiotic stress that inhibits plant growth and reduces crop productivity. Several microarray studies have been conducted on genome-wide gene expression profiles of rice during its responses to various stresses. However, little is known about the transcriptional changes in rice genes under low-K+ conditions.ResultsWe analyzed the transcriptomic profiles of rice roots in response to low-K+ stress. The roots of rice seedlings with or without low-K+ treatment were harvested after 6 h, and 3 and 5 d, and used for microarray analysis. The microarray data showed that many genes (2,896) were up-regulated or down-regulated more than 1.2-fold during low-K+ treatment. GO analysis indicated that the genes showing transcriptional changes were mainly in the following categories: metabolic process, membrane, cation binding, kinase activity, transport, and so on. We conducted a comparative analysis of transcriptomic changes between Arabidopsis and rice under low-K+ stress. Generally, the genes showing changes in transcription in rice and Arabidopsis in response to low-K+ stress displayed similar GO distribution patterns. However, there were more genes related to stress responses and development in Arabidopsis than in rice. Many auxin-related genes responded to K+ deficiency in rice, whereas jasmonic acid-related enzymes may play more important roles in K+ nutrient signaling in Arabidopsis.ConclusionsAccording to the microarray data, fewer rice genes showed transcriptional changes in response to K+ deficiency than to phosphorus (P) or nitrogen (N) deficiency. Thus, transcriptional regulation is probably more important in responses to low-P and -N stress than to low-K+ stress. However, many genes in some categories (protein kinase and ion transporter families) were markedly up-regulated, suggesting that they play important roles during K+ deficiency. Comparative analysis of transcriptomic changes between Arabidopsis and rice showed that monocots and dicots share many similar mechanisms in response to K+ deficiency, despite some differences. Further research is required to clarify the differences in transcriptional regulation between monocots and dicots.
Highlights
Potassium (K+) is an important nutrient ion in plant cells and plays crucial roles in many plant physiological and developmental processes
To investigate the transcriptional changes in rice roots under K+ deficiency, we first determined the appropriate period of low-K+ treatment
Changes in the K+ supply level would affect their transcription levels. These results suggested that long-term K+ deficiency may affect the regulation of metabolic processes, leading to depressed cellular activities and a slower plant growth rate to enable the plant to survive in nutrient-limited conditions
Summary
Potassium (K+) is an important nutrient ion in plant cells and plays crucial roles in many plant physiological and developmental processes. Potassium (K+) is the most abundant monovalent cation in plant cells and accounts for 2–10% of plant dry weight [1]. It plays crucial roles in many physiological processes in living plant cells, including osmoregulation, control of turgor pressure, electrical neutralization, and enzyme activation [1,2]. Transporter genes are induced by low-K+ conditions. [13] and AtCHX17 [14] were induced by K+ starvation These K+ transporters may be involved in K+ acquisition and homeostasis in plant cells under low-K+ conditions. Transcriptomic analysis of Arabidopsis under low-K+ stress identified many candidate genes related to low-K+ perception, and regulatory pathways associated with responses to K+ deficiency [9,15]
Sign-in/Register to view highlights & summary Sign-in/Register to access full text options 
Talk to us
Join us for a 30 min session where you can share your feedback and ask us any queries you have
Schedule a call
