Abstract
Mouse embryonic fibroblasts lacking D-3-phosphoglycerate dehydrogenase (Phgdh), which catalyzes the first step of de novo synthesis of l-serine, are particularly sensitive to depletion of extracellular L-serine. In these cells, depletion of l-serine leads to a rapid reduction of intracellular L-serine, cell growth arrest, and altered expression of a wide variety of genes. However, it remains unclear whether reduced availability of extracellular l-serine elicits such responses in other cell types expressing Phgdh. Here, we show in the mouse hepatoma cell line Hepa1-6 that extracellular l-serine depletion transiently induced transcriptional activation of Atf4-target genes, including cation transport regulator-like protein 1 (Chac1). Expression levels of these genes returned to normal 24 h after l-serine depletion, and were suppressed by the addition of l-serine or glycine in the medium. Extracellular l-serine depletion caused a reduction of extracellular and intracellular glycine levels but maintained intracellular l-serine levels in the cells. Further, Phgdh and serine hydroxymethyltransferase 2 (Shmt2) were upregulated after l-serine depletion. These results led us to conclude that the Atf4-mediated gene expression program is activated by extracellular l-serine depletion in Hepa1-6 cells expressing Phgdh, but is antagonized by the subsequent upregulation of l-serine synthesis, mainly from autonomous glycine consumption.
Highlights
L-serine (Ser), a nutritionally dispensable amino acid, serves as an indispensable metabolic precursor for various biomolecules essential to fundamental cellular processes
Ser is synthesized de novo from 3-phosphoglycerate via a pathway called the phosphorylated pathway, which is catalyzed by 3-phosphoglycerate dehydrogenase (Phgdh), phosphoserine aminotransferase 1
We previously demonstrated that extracellular Ser deficiency led to cell growth arrest and cell death via phosphorylation of p38 MAPK, which was activated by an accumulation of 1-deoxy-sphinganine to reduce Ser availability in Phgdh-deficient mouse embryonic fibroblast (KO-MEFs) [6,7]
Summary
L-serine (Ser), a nutritionally dispensable amino acid, serves as an indispensable metabolic precursor for various biomolecules essential to fundamental cellular processes. These molecules include proteins, other amino acids, tetrahydroxy folate derivatives, membrane lipids, and nucleotides. This is due to their roles as precursors of purine nucleotides and ATP production that contribute to folic acid metabolism, and glutathione (GSH) which regulates intracellular redox homeostasis [1,2,3] In addition to these well-established roles in the cancer metabolism, ample evidence highlights that Ser and Gly metabolism contributes to epigenetic modifications of DNA and RNA via maintaining mitochondrial one carbon pathway and SAM in cancer cells [4,5]
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