Abstract
A principally new approach to the classifications of nucleotide sequences based on the natural classification concept is proposed. As a result of natural classification of the nucleotide sequences, we obtain regularity matrices, where nucleotides are interconnected by regularities. Method, algorithm and software system DNANatClass for performing the natural classification have been developed. Experimental results comparing weight matrices with regularity matrices are presented. In this experiment, site recognition by regularity matrices appears to be more accurate than by weight matrixes.
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