Towards understanding structure-stability and surface properties of laminin peptide YIGSR and mutants

Abstract

Properties of laminin peptide YIGSR and its mutated sequences YIGSD, YIGSS, YIGSN and YIGSQ have been investigated using molecular dynamics simulations (MDS) and Langmuir films at air/water interface. Simulation studies on laminin peptide YIGSR were performed in the isothermal–isobaric (N, P, T) ensemble, with run up to 5 ns in water as well as lipid environment at 298 K. From different initial configurations, shape transformations of the peptides on the timescale of nanoseconds were observed. The results showed YIGSR to be the most stable peptide with the order of minimized energy being YIGSR < YIGSQ < YIGSD < YIGSN < YIGSS. Subsequent experiments with newly synthesized amphiphilic derivatives of the mutated peptides were carried out for their monolayer formation and stability at air/water interface using surface pressure–molecular area (π– A) and surface potential–molecular area (Δ V– A) isotherms. The surface and interface activity of these compounds followed a similar trend as with the MDS studies. Results suggest that single amino acid mutation leads to large changes in minimized energy, surface activity and different rates to reach stable conformation. The native YIGSR is the most stable sequence with highest surface activity while YIGSS is least stable and has the lowest surface activity. This corroborated the results of the MDS.