Abstract

Milk and dairy products are valuable sources of food for humans. Increased milk yield and changes in milk composition in dairy cows have been achieved through a variety of means including better nutrition, management and genetic selection. This selection can be performed without consideration of the specific genes and genetic variation involved. However, association analysis using dense SNP genotyping panels provides an approach for identifying genomic regions affecting milk production. Coupling physiological and metabolic information with association analysis results can provide greater insight into the specific genetic variants and molecular mechanisms affecting production traits as well as the potential effects of these variants on fertility in dairy cattle. To this end, this review highlights key tissues, metabolic pathways and genes of importance in lactating dairy cattle, particularly early in lactation. Physiological and metabolic adaptations in three key tissues (adipose, mammary gland and liver) are discussed, followed by the important endocrine adaptations during negative energy balance. Key genes mediating metabolic and endocrine adaptations are also highlighted. Finally, genes that account for variation in production traits are presented in relation to the tissues and processes described. Knowledge of the genes and pathways involved will be important for ongoing efforts aimed at finding other genes and variants that contribute to milk production and fertility traits. Also, a better understanding of the molecular basis of these traits may lead to more accurate genomic predictions.

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