Abstract

To explore the prognostic related factors and mechanisms of gastric cancer (GC), we performed the systematic analysis with integrated bioinformatics tools based on multiple on-line datasets. With uni-variate COX analysis, we screened out 37 survival hazardous genes in GC. Further GO assays disclosed that the signatures related with extracellular matrix and structure, and the functions of “cell adhesion molecule binding” and “integrin binding” were the vital mechanisms of disease progression, and tissue inhibitor of metalloproteinase-2 (TIMP2) was the potential biomarker for prognosis. Based on GSEA, GSVA and GCN, TIMP2 was demonstrated to interact with multiple integrin pathways and involve in the regulation of EMT, cell adhesion, and angiogenesis of GC. The associations of TIMP2 expression with reduced OS and RFS of patients were declared by Kaplan-Meier analysis, and further confirmed by 1000 internal bootstrap replications and external KM plotter analysis. With multi-variate COX regression and time-dependent ROC analysis, we validated the prediction independency and capacity of TIMP2 for prognosis. The relationships of TIMP2 with clinicopathological characteristics were also uncovered. Taken together, our findings identify TIMP2 as the novel candidate biomarker for poorer outcome of GC patients, and revealed the underlying functions of TIMP2 and the potential mechanisms for GC progression.

Highlights

  • Gastric cancer (GC) is one of the most fetal diseases worldwide, and accounts for the fourth most common cancer and the second leading cause of cancer death[1]

  • The data from the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) and Sequence Read Archive (SRA) involve dozens of cancer types and hundreds of cases for each cancer type, and have become the important study resources based on the great superiority of more variety and objectivity[5]

  • Most studies were more focused on data mining in a single dataset; lack of systematic and overall evaluation of related data; and absence of pre-analysis case selection according to clinicopathological information, provided the results with limited applicability and reliability

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Summary

Introduction

Gastric cancer (GC) is one of the most fetal diseases worldwide, and accounts for the fourth most common cancer and the second leading cause of cancer death[1]. There are respective 9 (A) and 5(B) integrin-related signatures enriched by high TIMP2 expression in the GSVA based on GSE62254 and GSE15459.

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