Abstract

Single crystals and powder samples of uric acid and uric acid dihydrate, known as uricite and tinnunculite biominerals, were extracted from renal stones and studied using single-crystal and powder X-ray diffraction (SC and PXRD) at various temperatures, as well as IR spectroscopy. The results of high-temperature PXRD experiments revealed that the structure of uricite is stable up to 380 °C, and then it loses crystallinity. The crystal structure of tinnunculite is relatively stable up to 40 °C, whereas above this temperature, rapid release of H2O molecules occurs followed by the direct transition to uricite phase without intermediate hydration states. SCXRD studies and IR spectroscopy data confirmed the similarity of uricite and tinnunculite crystal structures. SCXRD at low temperatures allowed us to determine the dynamics of the unit cells induced by temperature variations. The thermal behavior of uricite and tinnunculite is essentially anisotropic; the structures not only expand, but also contract with temperature increase. The maximal expansion occurs along the unit cell parameter of 7 Å (b in uricite and a in tinnunculite) as a result of the shifts of chains of H-bonded uric acid molecules and relaxation of the π-stacking forces, the weakest intermolecular interactions in these structures. The strongest contraction in the structure of uricite occurs perpendicular to the (101) plane, which is due to the orthogonalization of the monoclinic angle. The structure of tinnunculite also contracts along the [010] direction, which is mostly due to the stretching mechanism of the uric acid chains. These phase transitions that occur within the range of physiological temperatures emphasize the particular importance of the structural studies within the urate system, due to their importance in terms of human health. The removal of supersaturation in uric acid in urine at the initial stages of stone formation can occur due to the formation of metastable uric acid dihydrate in accordance with the Ostwald rule, which would serve as a nucleus for the subsequent growth of the stone at further formation stages; afterward, it irreversibly dehydrates into anhydrous uric acid.

Highlights

  • The lithosphere contains about 99.99% of all carbon on Earth [1], about three-quarters of which is inorganic

  • A number of organic minerals are found in pathogenic biomineral formations within the human body, such as urinary system stones and aggregates in bone marrow and myocardium

  • Pathogenic formations of uric acid occur in the case of purine exchange and uric acid metabolism violations [7]

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Summary

Introduction

The lithosphere contains about 99.99% of all carbon on Earth [1], about three-quarters of which is inorganic (carbonate minerals). The rest is organic carbon, for example kerogen [2]. Minerals 2019, 9, 373 includes more than 60 species. The majority of organic mineral species are salts of organic acids, among which oxalates are the most widely represented [3,4]. A number of organic minerals are found in pathogenic biomineral formations within the human body, such as urinary system stones and aggregates in bone marrow and myocardium. These include, for example, hydrated calcium oxalates whewellite, weddellite, and caoxite [5], and uric acid (uricite) and uric acid dihydrate (tinnunculite) [6]. Pathogenic formations of uric acid occur in the case of purine exchange and uric acid metabolism violations [7]

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