The use of deuterium exchange for the study of the distortion of α-helices in proteins

Abstract

The geometrical distortion of the α-helical structure of the globular proteins sperm-whale myoglobin, bacteriophage T4 lysozyme and hen egg-white lysozyme have been studied by means of deuterium exchange in solution. It was examined with the use of infrared spectroscopy in the region of the amide A band. The parameters of this band are known to be dependent on the length and geometry of the peptide hydrogen bond. In this way an estimation of the structural heterogeneity of the polypeptide backbone of the protein molecule has been achieved by studying the half-width of the amide A band during successive deuteration of the protein in heavy water solution. For all the proteins studied the peptide groups with broad amide A bands were exchanged at the first stage. These groups have been assigned as belonging to the unordered form of the molecule. The α-helical fragments were assigned to have smaller values of half-widths of the amide A band, and these were exchanged at the second stage. From these data α-helical fragments were shown to be characterized by a set of geometrical distortions. The results obtained also disclose a correlation between the degree of geometrical distortion of α-helical structure in the protein molecule and the dynamic accessibility of their peptide groups to a water molecule.