Abstract

Human IgG2 antibody displays distinct therapeutically-useful properties compared with the IgG1, IgG3, and IgG4 antibody subclasses. IgG2 is the second most abundant IgG subclass, being able to bind human FcγRII/FcγRIII but not to FcγRI or complement C1q. Structural information on IgG2 is limited by the absence of a full-length crystal structure for this. To this end, we determined the solution structure of human myeloma IgG2 by atomistic X-ray and neutron-scattering modeling. Analytical ultracentrifugation disclosed that IgG2 is monomeric with a sedimentation coefficient (s20, w0) of 7.2 S. IgG2 dimer formation was ≤5% and independent of the buffer conditions. Small-angle X-ray scattering in a range of NaCl concentrations and in light and heavy water revealed that the X-ray radius of gyration (Rg ) is 5.2-5.4 nm, after allowing for radiation damage at higher concentrations, and that the neutron Rg value of 5.0 nm remained unchanged in all conditions. The X-ray and neutron distance distribution curves (P(r)) revealed two peaks, M1 and M2, that were unchanged in different buffers. The creation of >123,000 physically-realistic atomistic models by Monte Carlo simulations for joint X-ray and neutron-scattering curve fits, constrained by the requirement of correct disulfide bridges in the hinge, resulted in the determination of symmetric Y-shaped IgG2 structures. These molecular structures were distinct from those for asymmetric IgG1 and asymmetric and symmetric IgG4 and were attributable to the four hinge disulfides. Our IgG2 structures rationalize the existence of the human IgG1, IgG2, and IgG4 subclasses and explain the receptor-binding functions of IgG2.

Highlights

  • Human IgG2 antibody displays distinct therapeutically-useful properties compared with the IgG1, IgG3, and IgG4 antibody subclasses

  • Small-angle X-ray scattering in a range of NaCl concentrations and in light and heavy water revealed that the X-ray radius of gyration (Rg) is 5.2–5.4 nm, after allowing for radiation damage at higher concentrations, and that the neutron Rg value of 5.0 nm remained unchanged in all conditions

  • Human IgG2 from myeloma plasma was subjected to Superose 6 gel filtration to ensure that this was monodisperse immediately prior to analytical ultracentrifugation (AUC), SAXS, and SANS experiments

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Summary

The abbreviations used are

H, heavy chain; L, light chain; V, variable; C, constant; AUC, analytical ultracentrifugation; SAXS, small-angle X-ray scattering; SANS, small-angle neutron scattering; PDB, Protein Data Bank; r.m.s., root mean square; PNGase, peptide:N-glycosidase. The outputted structures are atomistic in their nature, because they are physically-realistic models with correctly-joined amino acid and glycan residues These outputs revealed asymmetric solution structures that resembled the IgG1 and (in part) the IgG4 crystal structures. We used joint small-angle X-ray and neutron-scattering (SAXS and SANS), analytical ultracentrifugation (AUC), and Monte Carlo modeling to analyze 123,371 physically-realistic IgG2 structures. The resulting best-fit atomistic models revealed that classical IgG2 possesses a Y-shaped symmetric conformation in solution. This outcome explained in structural terms for the first time the different IgG2 isoforms and the ligand-binding functions of IgG2 to C1q and the three human Fc␥R receptors.

Results
Discussion
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