Abstract

The Pleurotus ostreatus species complex is saprotrophic and of significant economic and ecological importance. However, species delimitation has long been problematic because of phenotypic plasticity and morphological stasis. In addition, the evolutionary history is poorly understood due to limited sampling and insufficient gene fragments employed for phylogenetic analyses. Comprehensive sampling from Asia, Europe, North and South America and Africa was used to run phylogenetic analyses of the P. ostreatus species complex based on 40 nuclear single-copy orthologous genes using maximum likelihood and Bayesian inference analyses. Here, we present a robust phylogeny of the P. ostreatus species complex, fully resolved from the deepest nodes to species level. The P. ostreatus species complex was strongly supported as monophyletic, and 20 phylogenetic species were recognized, with seven putatively new species. Data from our molecular clock analyses suggested that divergence of the genus Pleurotus probably occurred in the late Jurassic, while the most recent common ancestor of the P. ostreatus species complex diversified about 39 Ma in East Asia. Species of the P. ostreatus complex might migrate from the East Asia into North America across the North Atlantic Land Bridge or the Bering Land Bridge at different times during the late Oligocene, late Miocene and late Pliocene, and then diversified in the Old and New Worlds simultaneously through multiple dispersal and vicariance events. The dispersal from East Asia to South America in the middle Oligocene was probably achieved by a long-distance dispersal event. Intensification of aridity and climate cooling events in the late Miocene and Quaternary glacial cycling probably had a significant influence on diversification patterns of the complex. The disjunctions among East Asia, Europe, North America and Africa within Clade IIc are hypothesized to be a result of allopatric speciation. Substrate transitions to Apiaceae probably occurred no earlier than 6 Ma. Biogeographic analyses suggested that the global cooling of the late Eocene, intensification of aridity caused by rapid uplift of the QTP and retreat of the Tethys Sea in the late Miocene, climate cooling events in Quaternary glacial cycling, and substrate transitions have contributed jointly to diversification of the species complex.

Highlights

  • The origin and evolution of species is one of the most important issues in biological research (Seehausen et al 2014; Wiens 2004), and biogeographic studies aim to reconstruct the origin, speciation and distribution patterns of organisms (AI-Tanlimi et al 2003; Schluter 2000)

  • After removal of all sequences of poor quality, 1759 single-copy nucleotide sequences of 51 Pleurotus species and outgroup species were newly sequenced in this study; these sequences were deposited in GenBank (GenBank accession numbers: MN546051MN546733, MN557857-MN558583, MN565733MN565779, MN919217-MN919343, MN974593MN974674, MT157415-MT157507)

  • Biogeographic analyses in our study suggested that intensification of aridity caused by rapid uplift of the Qinghai-Tibet Plateau (QTP) and retreat of the Tethys Sea in the late Miocene, climate cooling events in Quaternary glacial cycling, and substrate transitions might contribute jointly to rapid diversification of the species complex since 10 Median age (Ma) (Fig. 3a, c, e, f)

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Summary

Introduction

The origin and evolution of species is one of the most important issues in biological research (Seehausen et al 2014; Wiens 2004), and biogeographic studies aim to reconstruct the origin, speciation and distribution patterns of organisms (AI-Tanlimi et al 2003; Schluter 2000). It’s worth noting that the limited numbers of molecular phylogenetic studies involving mushrooms have gained new insights into the historical dynamics of macrofungi and show that macrofungi provide interesting subjects for biogeographic studies (Coetzee et al 2000; James et al 2001; Lumbsch et al 2008; Nagy et al 2011). Molecular-based biogeographic studies of macrofungi have mainly focused on ectomycorrhizal fungi (EMF) with wide geographic distributions (Cai et al 2014; Feng et al 2012; Han et al 2018; Hibbett and Matheny 2009; Hosaka et al 2008; Sánchez-Ramríez et al 2015; Truong et al 2017). The biogeographic structures of various saprotrophic agarics in the Northern Hemisphere or with broad geographical distribution have recently started to be uncovered (Hibbett et al 1998; Methven et al 2000). The spatio-temporal dynamics and mechanisms of distribution and diversification of global saprotrophic fungal species are poorly understood

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