Abstract

DNA double strand breaks (DSBs) are the most cytotoxic DNA lesions and, if not repaired, lead to chromosomal rearrangement, genomic instability and cell death. Cells have evolved a complex network of DNA repair and signalling molecules which promptly detect and repair DSBs, commonly known as the DNA damage response (DDR). The DDR is orchestrated by various post-translational modifications such as phosphorylation, methylation, ubiquitination or SUMOylation. As DSBs are located in complex chromatin structures, the repair of DSBs is engineered at two levels: (i) at sites of broken DNA and (ii) at chromatin structures that surround DNA lesions. Thus, DNA repair and chromatin remodelling machineries must work together to efficiently repair DSBs. Here, we summarize the current knowledge of the ubiquitin-dependent molecular unfoldase/segregase p97 (VCP in vertebrates and Cdc48 in worms and lower eukaryotes) in DSB repair. We identify p97 as an essential factor that regulates DSB repair. p97-dependent extraction of ubiquitinated substrates mediates spatio-temporal protein turnover at and around the sites of DSBs, thus orchestrating chromatin remodelling and DSB repair. As p97 is a druggable target, p97 inhibition in the context of DDR has great potential for cancer therapy, as shown for other DDR components such as PARP, ATR and CHK1.This article is part of the themed issue ‘Chromatin modifiers and remodellers in DNA repair and signalling’.

Highlights

  • The AAAþ ATPase p97, known as valosin-containing protein (VCP) in vertebrates ( p97/VCP) or Cdc48 in worms and lower eukaryotes ( p97/ Cdc48), is a central component of the ubiquitin-proteasome system (UPS) [1,2,3]. p97 uses energy from ATP to remodel ubiquitinated substrates from different macro-complexes and cellular locations, facilitating their proteasome-dependent degradation and/or recycling

  • We demonstrate that p97 regulates timing and fidelity of double strand breaks (DSBs) repair at two levels: (i) directly at broken DNA and (ii) on chromatin structure in the vicinity of DSBs

  • The p97 system has recently enlarged the list of genome caretakers required to perform the repair of DSBs

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Summary

Introduction

The AAAþ ATPase p97, known as valosin-containing protein (VCP) in vertebrates ( p97/VCP) or Cdc in worms and lower eukaryotes ( p97/ Cdc48), is a central component of the ubiquitin-proteasome system (UPS) [1,2,3]. p97 uses energy from ATP to remodel (unfold/segregate) ubiquitinated substrates from different macro-complexes and cellular locations, facilitating their proteasome-dependent degradation and/or recycling. P97 uses energy from ATP to remodel (unfold/segregate) ubiquitinated substrates from different macro-complexes and cellular locations, facilitating their proteasome-dependent degradation and/or recycling. Specificity towards different ubiquitinated substrates is conferred by p97-adaptor proteins (cofactors), which form various p97 sub-complexes known altogether as the p97 system [3,4]. Through their p97-interacting motifs and (in most cases) ubiquitinbinding domains (UBDs), p97-cofactors bridge the p97 ATPase with specific and mostly ubiquitinated substrates. The p97 system ensures genome stability by processing numerous substrates involved in DNA replication, DNA transcription, DNA repair, mitosis. The p97 system represents a unique system that bridges DNA repair and chromatin remodelling machineries to ensure genome integrity after DSB formation

DNA double strand break repair
The role of p97 in double strand breakinduced chromatin remodelling
Conclusion
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79. Bursomanno S et al 2015 Proteome-wide analysis
98. Thorslund T et al 2015 Histone H1 couples initiation
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