Abstract

Although distinct amino acid motifs containing consecutive prolines (polyP) cause ribosome stalling, which necessitates recruitment of the translation elongation factor P (EF-P), they occur strikingly often in bacterial proteomes. For example, polyP motifs are found in more than half of all histidine kinases in Escherichia coli K-12, which raises the question of their role(s) in receptor function. Here we have investigated the roles of two polyP motifs in the osmosensor and histidine kinase EnvZ. We show that the IPPPL motif in the HAMP domain is required for dimerization of EnvZ. Moreover, replacement of the prolines in this motif by alanines disables the receptor’s sensor function. The second motif, VVPPA, which is located in the periplasmic domain, was found to be required for interaction with the modulator protein MzrA. Our study also reveals that polyP-dependent stalling has little effect on EnvZ levels. Hence, both polyP motifs in EnvZ are primarily involved in protein-protein interaction. Furthermore, while the first motif occurs in almost all EnvZ homologues, the second motif is only found in species that have MzrA, indicating co-evolution of the two proteins.

Highlights

  • Proline differs from all other natural amino acids in possessing a pyrrolidine ring, a five-membered ring that includes the amino group

  • We show that the IPPPL motif in the HAMP domain is required for dimerization of EnvZ

  • We studied the role of the two polyP motifs in EnvZ of E. coli K-12

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Summary

Introduction

Proline differs from all other natural amino acids in possessing a pyrrolidine ring, a five-membered ring that includes the amino group. This chemical structure fixes the torsional angle f of the N-Cα bond and restricts conformational flexibility [1]. Proline is the sole amino acid that can adopt cis and trans conformations [4]. A sequence of consecutive prolines results in the formation of either the right-handed poly (cis-) proline helix I (PPI) or the left-handed poly (trans-) proline helix II (PPII). PPII is accepted to be the third major secondary structure element in folded proteins and is often involved in protein- and nucleic-acid-binding sites [5,6,7]

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