Abstract

One of the major ways of acquiring multidrug resistance in bacteria is via drug influx and efflux pathways. Here, we show that E. coli with compromised Rho-dependent transcription termination function has enhanced broad-spectrum antibiotic susceptibility, which arises from the inefficient TolC-efflux process and increased permeability of the membrane. The Rho mutants have altered morphology, distinct cell surface, and increased levels of lipopolysaccharide in their outer membrane, which might have rendered the TolC efflux pumps inefficient. These alterations are due to the upregulations of poly-N-acetyl-glucosamine and lipopolysaccharide synthesis operons because of inefficient Rho functions. The Rho mutants are capable of growing on various dipeptides and carbohydrate sources, unlike their WT counterpart. Dipeptides uptake arises from the upregulations of the di-peptide permease operon in these mutants. The metabolomics of the Rho mutants revealed the presence of a high level of novel metabolites. Accumulation of these metabolites in these Rho mutants might titrate out the TolC-efflux pumps, which could further reduce their efficiency. We conclude that the transcription termination factor, Rho, regulates the broad-spectrum antibiotic susceptibility of E. coli through multipartite pathways in a TolC-dependent manner. The involvement of Rho-dependent termination in multiple pathways and its association with antibiotic susceptibility should make Rho-inhibitors useful in the anti-bacterial treatment regimen.

Highlights

  • The factor-dependent transcription termination process is well conserved among bacteria (D’Heygere et al, 2013; Ray-Soni et al, 2016)

  • These concentrations were obtained from the estimates of IC50 of these antibiotics for the with rho (WT) and the Rho mutant strains given in Supplementary Table S1

  • The enhanced antibiotic susceptibility of the Rho mutants observed in the growth curves was reflected in the colony-forming unit (CFU) assays shown in Supplementary Figure S1B

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Summary

Introduction

The factor-dependent transcription termination process is well conserved among bacteria (D’Heygere et al, 2013; Ray-Soni et al, 2016). Rho Regulates Antibiotic Sensitivity of a large number of functionally unrelated operons is under its control (Cardinale et al, 2008; Peters et al, 2012). This has led to its involvement in various physiological pathways that are not connected. The periplasmic space is primarily made of viscous peptidoglycans (Nikaido, 2003; Ruiz et al, 2006; Pages et al, 2008; Delcour, 2009) In addition to these physical barriers to the influx of antibiotics, multiple efflux pumps present in the cell envelope contribute further to reducing the antibiotic concentrations inside Gram-negative bacteria (Li et al, 2015)

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