Abstract

A critical problem in current molecular biology is to gain a detailed understanding of the molecular mechanisms by which related transcription factor isoforms with identical DNA sequence specificity mediate distinct transcription responses. Pit-1 and Pit-1beta constitute such a pair of transcription factor isoforms. Pit-1 enhances the Ras signaling pathway to the prolactin promoter, and Pit-1beta represses basal prolactin promoter activity as well as Ras signaling to the prolactin promoter in pituitary cells. We have previously demonstrated that the beta-domain amino acid sequence dictates the transcriptional properties of Pit-1beta. Here, we show that five hydrophobic beta-domain residues are required for Pit-1 isoform-specific repression of Ras signaling, and we demonstrate that sodium butyrate and trichostatin A, pharmacological inhibitors of histone deacetylation, as well as viral Ski protein, a dominant-negative inhibitor of recruitment of N-CoR/mSin3 histone deacetylase complexes, specifically reverse beta isoform-specific repression of Ras signaling. Moreover, we directly demonstrate, with a chromatin immunoprecipitation assay, that the Pit-1beta isoform alters the histone acetylation state of the proximal prolactin promoter. This differential analysis of Pit-1/Pit-1beta isoform function provides significant insights into the structural determinants that govern how different transcription factors with identical DNA sequence specificity can display opposite effects on target gene activity.

Highlights

  • Most transcription factors are members of extended families defined by conserved structural motifs, typically in the DNAbinding domain, yet differing in other domains, especially the transactivation domain (TAD).1 A number of transcription factors are expressed as a set of proteins derived from a single gene via alternative promoter usage or splicing events that result in virtually identical transcription factor isoforms that, can mediate distinct responses (e.g. PR-A versus PR-B; TR␤1 versus TR␤2; Oct 2.1 versus Oct 2.5; Ets-1 versus Ets-1⌬VII; and Pit-1 versus Pit-1␤) [1,2,3,4,5,6]

  • We focus on identifying key ␤-domain residues that are responsible for the ␤ isoform-specific repression of Ras signaling to the rPRL promoter, as well as identifying a mechanism for this repression

  • Replacement of each of these residues with alanine identified five hydrophobic residues that are required for the ␤-domain to act as a transcriptional repressor of Ras signaling to the rPRL promoter

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Summary

Introduction

Most transcription factors are members of extended families defined by conserved structural motifs, typically in the DNAbinding domain, yet differing in other domains, especially the transactivation domain (TAD).1 A number of transcription factors are expressed as a set of proteins derived from a single gene via alternative promoter usage or splicing events that result in virtually identical transcription factor isoforms that, can mediate distinct responses (e.g. PR-A versus PR-B; TR␤1 versus TR␤2; Oct 2.1 versus Oct 2.5; Ets-1 versus Ets-1⌬VII; and Pit-1 versus Pit-1␤) [1,2,3,4,5,6]. In GH4 pituitary cells, the two isoforms have opposite transcriptional effects with regard to Ras signaling to the rPRL promoter; Pit-1 enhances and Pit-1␤ represses the oncogenic RasVal-12 response [9, 22].

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