The next generation – the use of whole genome sequencing in outbreak management and HAI

Abstract

Introduction: The emergence of high consequence infectious diseases and extreme antibiotic resistance poses an increasing risk to patients of harm from healthcare associated infections (HAI) that inevitably are becoming more difficult to treat. Since 2017 some Queensland hospitals have been accessing rapid next generation ultra-resolution whole genome sequencing (WGS) technology to type bacteria to detect and prevent infection transmission and outbreaks well before they become established. WGS coupled with clinical support led by infection prevention and control experts ensures accurate, timely and appropriate interpretation of results.