Abstract

Looking at the variety of the thousands of different polypeptides that have been focused on in the research on the endoplasmic reticulum from the last five decades taught us one humble lesson: no one size fits all. Cells use an impressive array of components to enable the safe transport of protein cargo from the cytosolic ribosomes to the endoplasmic reticulum. Safety during the transit is warranted by the interplay of cytosolic chaperones, membrane receptors, and protein translocases that together form functional networks and serve as protein targeting and translocation routes. While two targeting routes to the endoplasmic reticulum, SRP (signal recognition particle) and GET (guided entry of tail-anchored proteins), prefer targeting determinants at the N- and C-terminus of the cargo polypeptide, respectively, the recently discovered SND (SRP-independent) route seems to preferentially cater for cargos with non-generic targeting signals that are less hydrophobic or more distant from the termini. With an emphasis on targeting routes and protein translocases, we will discuss those functional networks that drive efficient protein topogenesis and shed light on their redundant and dynamic nature in health and disease.

Highlights

  • Eucaryotic cells use the principle of compartmentalization to streamline the flow of information within the crowded intracellular environment

  • The recent observation of a dual recognition of GPI-anchored proteins at both termini may argue for such a scenario [43], where the C-terminus is captured by an SND component and the N-terminus by signal recognition particle (SRP) for subsequent targeting to the Sec61 complex

  • The original idea of a single targeting factor, a single receptor, and a single protein translocase has been massively expanded during the last years and a variety of targeting routes and translocases dedicated to the transport of different polypeptide precursors has been shown

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Summary

Introduction

Eucaryotic cells use the principle of compartmentalization to streamline the flow of information within the crowded intracellular environment. Precursor proteins relying on the GET1/2 complex or EMC require a differentially shaped opening compared to the membrane-spanning pore that is provided by the Sec complex. This shows that nature has apparently found more than one solution for polypeptides to traverse a membrane. In light of the macromolecular crowding and potential off-target destinations, one underlying theme that unifies those functional targeting and translocation networks is “safety first” During their journey from the inside of the ribosome to the ER membrane, the nascent polypeptides are handed over from one protected compartment and cavity to the next to avoid extensive folding and premature, unproductive interactions. We will summarize some of these protective micro-compartments and discuss key players of the functional targeting and translocation routes that chaperone polypeptides into or across the ER membrane

Two Prominent Types of Hydrophobic Targeting Signals
The Tripartite Nature of Cleavable Signal Peptides
Transmembrane Helices Are Efficient Targeting Signals
The Topological Diversity of Transmembrane Helices
The Crosstalk between Transmembrane Helices and Trans-Acting Factors
Multifactorial Polypeptide Targeting Pathways
The Juggling GET Cascade—Safety First
The Lonely SND Player—Mysterious All-Rounder
Cargo Capture by SRP
Cargo Capture by GET3
Cargo Capture by SGTA
Cargo Capture by BAG6
Cargo Capture by a Putative hSnd1
Common Cargo Capture Principles Used by Some Cytosolic Targeting Factors
The Interplay of Targeting Factors at the Ribosomal Exit Tunnel
Shaping the Polypeptide Fate from within the Ribosomal Tunnel
Allosteric Crosstalk from within the Tunnel to the Outside
Shaping the Polypeptide Fate from the Ribosomal Surface
Different ER Protein Translocases Act as Membrane-Integrated Chaperones
The Sec61 Translocase—Director for SPs and the Majority of TMHs
Opening of the Sec61 Complex by Targeting Signals
The Growing Family of Sec61 Complex-Associated Factors
Disease-Causing Mutations of Targeting and Translocation Components
Disease Associations of Protein Targeting Factors
Disease Associations of Receptor and Protein Translocase Subunits
Findings
Conclusions and Perspectives
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