Abstract

Mating in basidiomycetous fungi is often controlled by two unlinked, multiallelic loci encoding homeodomain transcription factors or pheromones/pheromone receptors. In contrast to this tetrapolar organization, Cryptococcus neoformans/Cryptococcus gattii have a bipolar mating system, and a single biallelic locus governs sexual reproduction. The C. neoformans MAT locus is unusually large (>100 kb), contains >20 genes, and enhances virulence. Previous comparative genomic studies provided insights into how this unusual MAT locus might have evolved involving gene acquisitions into two unlinked loci and fusion into one contiguous locus, converting an ancestral tetrapolar system to a bipolar one. Here we tested this model by studying Cryptococcus heveanensis, a sister species to the pathogenic Cryptococcus species complex. An extant sexual cycle was discovered; co-incubating fertile isolates results in the teleomorph (Kwoniella heveanensis) with dikaryotic hyphae, clamp connections, septate basidia, and basidiospores. To characterize the C. heveanensis MAT locus, a fosmid library was screened with C. neoformans/C. gattii MAT genes. Positive fosmids were sequenced and assembled to generate two large probably unlinked MAT gene clusters: one corresponding to the homeodomain locus and the other to the pheromone/receptor locus. Strikingly, two divergent homeodomain genes (SXI1, SXI2) are present, similar to the bE/bW Ustilago maydis paradigm, suggesting one or the other homeodomain gene was recently lost in C. neoformans/C. gattii. Sequencing MAT genes from other C. heveanensis isolates revealed a multiallelic homeodomain locus and at least a biallelic pheromone/receptor locus, similar to known tetrapolar species. Taken together, these studies reveal an extant C. heveanensis sexual cycle, define the structure of its MAT locus consistent with tetrapolar mating, and support the proposed evolutionary model for the bipolar Cryptococcus MAT locus revealing transitions in sexuality concomitant with emergence of a pathogenic clade. These studies provide insight into convergent processes that independently punctuated evolution of sex-determining loci and sex chromosomes in fungi, plants, and animals.

Highlights

  • Many organisms, in particular microorganisms, can reproduce both asexually and sexually, the vast majority appears to undergo sexual reproduction during their life cycles

  • The fungal Mating Type Locus (MAT) locus is a model for gene cluster evolution and shares features with sex chromosomes of plants/ animals

  • In previous studies with C. neoformans/C. gattii, a model for this unusual locus was proposed in which two ancestral unlinked loci were fused into one contiguous locus

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Summary

Introduction

In particular microorganisms, can reproduce both asexually and sexually, the vast majority appears to undergo sexual reproduction during their life cycles. Sex might serve both roles, facilitating combinations of successful alleles and simultaneously purging the genome of deleterious ones. Until recently it has been difficult to test these models for the possible benefits of sex in experimentally tractable model organisms. Recent studies with the model yeast S. cerevisiae have provided direct experimental evidence for a benefit of sexual reproduction. A series of related studies in both S. cerevisiae and the model alga Chlamydomonas provide additional support for a benefit conferred by sex in response to novel or challenging environments [4,5,6]. In response to constant environments, asexual reproduction is likely to be of relative benefit by relieving strains from the metabolic and genetic costs associated with sex [7]. A balance between sexual and asexual reproduction may be struck in response to different environmental conditions

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