The low-cost Shifter microscope stage transforms the speed and robustness of protein crystal harvesting.

Nathan David Wright,Radosław Nowak,Romain Talon,Joseph Newman,Helton Wiggers,Nick Mitrovich,Mingda Ye,Patrick Collins,Elliot Nelson,Lizbé Koekemoer,Frank Von Delft,Tobias Krojer,Jia Tsing Ng

doi:10.1107/s2059798320014114

Abstract

Despite the tremendous success of X-ray cryo-crystallography in recent decades, the transfer of crystals from the drops in which they are grown to diffractometer sample mounts remains a manual process in almost all laboratories. Here, the Shifter, a motorized, interactive microscope stage that transforms the entire crystal-mounting workflow from a rate-limiting manual activity to a controllable, high-throughput semi-automated process, is described. By combining the visual acuity and fine motor skills of humans with targeted hardware and software automation, it was possible to transform the speed and robustness of crystal mounting. Control software, triggered by the operator, manoeuvres crystallization plates beneath a clear protective cover, allowing the complete removal of film seals and thereby eliminating the tedium of repetitive seal cutting. The software, either upon request or working from an imported list, controls motors to position crystal drops under a hole in the cover for human mounting at a microscope. The software automatically captures experimental annotations for uploading to the user's data repository, removing the need for manual documentation. The Shifter facilitates mounting rates of 100-240 crystals per hour in a more controlled process than manual mounting, which greatly extends the lifetime of the drops and thus allows a dramatic increase in the number of crystals retrievable from any given drop without loss of X-ray diffraction quality. In 2015, the first in a series of three Shifter devices was deployed as part of the XChem fragment-screening facility at Diamond Light Source, where they have since facilitated the mounting of over 120 000 crystals. The Shifter was engineered to have a simple design, providing a device that could be readily commercialized and widely adopted owing to its low cost. The versatile hardware design allows use beyond fragment screening and protein crystallography.

Highlights

Since the turn of the century, macromolecular crystallography (MX) has undergone a revolution in productivity to become a high-throughput technique, thanks in a large part to machine automation
When all drops from each cohort were pooled, we found an improvement in the high-resolution limit for diffraction from the Manual crystals to Shifter Stationary (t-statistic 2.48, p = 0.018) and from Shifter Stationary to Shifter Moving (t-statistic 2.47, p = 0.015)
This suggests that stage movements provide a small additional improvement in crystal survival on top of the highly significant improvement over the Manual process

Summary

Introduction

Since the turn of the century, macromolecular crystallography (MX) has undergone a revolution in productivity to become a high-throughput technique, thanks in a large part to machine automation. Access to bright X-ray sources, high-speed X-ray detectors and cryogenic sample changers that allow complete X-ray data sets to be measured in less than a minute (Bowler et al, 2015; Grimes et al, 2018) is routine. Minimizing experimental variability between crystals and maximizing mounting productivity requires simultaneous management of multiple challenges: fine movements and sensory input to manipulative crystals gently, awareness of changing drop conditions, organization of multiple sample plates and thorough data management. Manual mounting of crystals presents a source of experimental variability and sample loss, and is a bottleneck in the wider MX workflow

Methods

Results

Discussion

Conclusion