Abstract

Buffering, the use of reservoirs of molecules to maintain concentrations of key molecular species, and negative feedback are the primary known mechanisms for robust homeostatic regulation. Toour knowledge, however, the fundamental principles behind their combined effect have not been elucidated. Here, we study the interplay between buffering and negative feedback in the context of cellular homeostasis. We show that negative feedback counteracts slow-changing disturbances, whereas buffering counteracts fast-changing disturbances. Furthermore, feedback and buffering have limitations that create trade-offs for regulation: instability in the case of feedback and molecular noise in the case of buffering. However, because buffering stabilizes feedback and feedback attenuates noise from slower-acting buffering, their combined effect on homeostasis can be synergistic. These effects can be explained within a traditional control theory framework and are consistent with experimental observations of both ATP homeostasis and pH regulation invivo. These principles are critical for studying robustness and homeostasis in biology and biotechnology.

Highlights

  • Homeostasis and robustness are fundamental to life (Cannon, 1932; Kitano, 2004, 2007; Sherwood, 2013)

  • Studying the principles that enable such robust regulation is critical to topics ranging from the progression of complex diseases and the design of new therapeutic treatments (Kitano, 2004) to biotechnology (Mulukutla et al, 2016) and synthetic biology (Zhang et al, 2012; Liu et al, 2014; Cameron et al, 2014)

  • Negative feedback counteracts a decrease in cellular ATP by increasing the activities of metabolic enzymes in glycolysis

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Summary

Introduction

Homeostasis and robustness are fundamental to life (Cannon, 1932; Kitano, 2004, 2007; Sherwood, 2013). Negative feedback and buffering are the primary mechanisms behind the robust regulation of molecular concentrations in biochemical processes (Kitano, 2004; Alon, 2007; Iglesias and Ingalls, 2009; Ma et al, 2009; Sherwood, 2013). The concentration of a ‘‘regulated’’ molecule is sensed, and the information is used by a biological actuator in such a way as to ensure that any concentration changes of the regulated molecule are opposed (Sherwood, 2013). Negative feedback counteracts a decrease in cellular ATP by increasing the activities of metabolic enzymes in glycolysis

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