The interaction between troxerutin and pepsin was studied by multispectral method and molecular docking simulation

Abstract

The mechanism of action and quenching mode between troxerutin and pepsin were investigated in this study using ultraviolet-visible absorption spectroscopy, Fourier transform infrared spectroscopy, fluorescence spectroscopy, three-dimensional fluorescence spectroscopy, synchronous fluorescence spectroscopy, circular binary chromatography, and molecular docking simulation. The fluorescence spectroscopy results demonstrated a reduction in the fluorescence intensity of pepsin upon addition of troxerutin, indicating its quenching effect on pepsin. By employing the Stern-Volmer equation to determine KSV and Kq values, it can be inferred that troxerutin exhibits static quenching as the predominant mode of interaction with pepsin. By conducting experiments, the binding constant KA and the number of binding sites n for troxerutin and pepsin were determined, with the number of binding sites n being close to 1, indicating the presence of a specific binding site between troxerutin and pepsin. Thermodynamic analysis was employed to calculate the thermodynamic parameters at 298 K. The negative values of ΔH and ΔS suggest that van der Waals forces and hydrogen bonding are predominant in mediating the interaction between troxerutin and pepsin. The negativity of ΔG indicates the spontaneity of the reaction. The results of molecular docking simulations demonstrate that troxerutin binds to the central active region of pepsin, with hydrogen bonds, van der Waals forces, hydrophobic interactions and adverse collisions contributing to the binding forces between troxerutin and pepsin. Based on the analysis of UV–vis absorption spectrum, three-dimensional fluorescence spectrum, synchronous fluorescence spectrum, and infrared spectrum, it is evident that troxerutin modulates the microenvironment surrounding tryptophan amino acid residues in pepsin. This modulation leads to a reduction in polarity and hydrophilicity while increasing hydrophobicity, consequently inducing alterations in the secondary structure of pepsin. By measuring the binding distance, it is calculated that 0.5 R0 < r < 1.5 R0 and r < 7 nm, indicating the occurrence of non-radiative energy transfer between troxerutin and pepsin. Analysis of the circular dichroism spectrum confirms that pepsin predominantly adopts a β-folded (β-sheet) conformation, providing evidence for the interaction between troxerutin and pepsin. Furthermore, troxerutin induces alterations in the microenvironment of pepsin's structure, ultimately resulting in changes to its secondary structure. These findings shed light on the binding mechanism underlying troxerutin and pepsin interactions while offering valuable reference data for future research and applications involving troxerutin.