Abstract
Background: Coronary artery disease (CAD) is the leading cause of cardiovascular death. The competitive endogenous RNAs (ceRNAs) hypothesis is a new theory that explains the relationship between lncRNAs and miRNAs. The mechanism of ceRNAs in the pathological process of CAD has not been fully elucidated. The objective of this study was to explore the ceRNA mechanism in CAD using the integrative bioinformatics analysis and provide new research ideas for the occurrence and development of CAD.Methods: The GSE113079 dataset was downloaded, and differentially expressed lncRNAs (DElncRNAs) and genes (DEGs) were identified using the limma package in the R language. Weighted gene correlation network analysis (WGCNA) was performed on DElncRNAs and DEGs to explore lncRNAs and genes associated with CAD. Functional enrichment analysis was performed on hub genes in the significant module identified via WGCNA. Four online databases, including TargetScan, miRDB, miRTarBase, and Starbase, combined with an online tool, miRWalk, were used to construct ceRNA regulatory networks.Results: DEGs were clustered into ten co-expression modules with different colors using WGCNA. The brown module was identified as the key module with the highest correlation coefficient. 188 hub genes were identified in the brown module for functional enrichment analysis. DElncRNAs were clustered into sixteen modules, including seven modules related to CAD with the correlation coefficient more than 0.5. Three ceRNA networks were identified, including OIP5-AS1-miR-204-5p/miR-211-5p-SMOC1, OIP5-AS1-miR-92b-3p-DKK3, and OIP5-AS1-miR-25-3p-TMEM184B.Conclusion: Three ceRNA regulatory networks identified in this study may play crucial roles in the occurrence and development of CAD, which provide novel insights into the ceRNA mechanism in CAD.
Highlights
Cardiovascular disease (CVD) is one of the leading causes of death in the world
We aimed to explore the complex interaction between lncRNAs, miRNAs, and mRNAs to investigate the potential mechanism of competitive endogenous RNAs (ceRNAs) in Coronary artery disease (CAD)
The results demonstrated that the expression levels of OIP5-AS1, DKK3, SMOC1, and TMEM184B were significantly higher in patients with CAD, while miR204-5p, miR-211-5p, miR-92b-3p, and miR-25-3p levels were significantly lower, which were consistent with our bioinformatic analysis (Figure 6)
Summary
Cardiovascular disease (CVD) is one of the leading causes of death in the world. Coronary artery disease (CAD) is the main cause of cardiovascular death [1], which increases the morbidity, mortality, and economic burden on societies worldwide [2]. The occurrence of CAD is associated with the interplay of genetic and environmental factors [3]. Coronary artery disease (CAD) is the leading cause of cardiovascular death. The competitive endogenous RNAs (ceRNAs) hypothesis is a new theory that explains the relationship between lncRNAs and miRNAs. The mechanism of ceRNAs in the pathological process of CAD has not been fully elucidated.
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