Abstract

The current paper highlights a new, interactive Shiny App that can be used to aid in understanding and teaching the important task of conducting a prior sensitivity analysis when implementing Bayesian estimation methods. In this paper, we discuss the importance of examining prior distributions through a sensitivity analysis. We argue that conducting a prior sensitivity analysis is equally important when so-called diffuse priors are implemented as it is with subjective priors. As a proof of concept, we conducted a small simulation study, which illustrates the impact of priors on final model estimates. The findings from the simulation study highlight the importance of conducting a sensitivity analysis of priors. This concept is further extended through an interactive Shiny App that we developed. The Shiny App allows users to explore the impact of various forms of priors using empirical data. We introduce this Shiny App and thoroughly detail an example using a simple multiple regression model that users at all levels can understand. In this paper, we highlight how to determine the different settings for a prior sensitivity analysis, how to visually and statistically compare results obtained in the sensitivity analysis, and how to display findings and write up disparate results obtained across the sensitivity analysis. The goal is that novice users can follow the process outlined here and work within the interactive Shiny App to gain a deeper understanding of the role of prior distributions and the importance of a sensitivity analysis when implementing Bayesian methods. The intended audience is broad (e.g., undergraduate or graduate students, faculty, and other researchers) and can include those with limited exposure to Bayesian methods or the specific model presented here.

Highlights

  • Through a recent systematic review of the literature in the Psychological Sciences, we know that the use of Bayesian methods is on the rise (van de Schoot et al, 2017)

  • We highlight how the App can be used to learn more about the important issue of prior sensitivity analysis within Bayesian statistics, and we provide an interactive platform for readers to gain a deeper understanding of the issues described here

  • Since there is no way to know the true value of a population parameter in application, it is not possible to know how much bias estimates contain unless a simulation study is conducted. This simulation study sets the stage for the importance of examining prior impact in application, a concept that we focus on in the interactive Shiny App presented

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Summary

Introduction

Through a recent systematic review of the literature in the Psychological Sciences, we know that the use of Bayesian methods is on the rise (van de Schoot et al, 2017). This review highlighted an unnerving fact: Many applied users of Bayesian methods are not properly implementing or reporting the techniques. Bayesian Prior Sensitivity Analysis: A Shiny App highlighted in this systematic review—namely, examining the impact of prior distributions through a sensitivity analysis. Understanding the impact of priors, and making subsequent decisions about these priors, is perhaps the trickiest element of implementing Bayesian methods. Many users of Bayesian estimation methods attempt to avoid this issue by using “diffuse” priors, but this is not always a viable approach because some models need informative priors. Our paper focuses on how to examine the impact of prior distributions in a transparent manner

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