Abstract

What defines whether the interaction between environment and organism creates a genetic memory able to be transferred to subsequent generations? Bacteria and the products of their metabolism are the most ubiquitous biotic environments to which every living organism is exposed. Both microbiota and host establish a framework where environmental and genetic factors are integrated to produce adaptive life traits, some of which can be inherited. Thus, the interplay between host and microbe is a powerful model to study how phenotypic plasticity is inherited. Communication between host and microbe can occur through diverse molecules such as small RNAs (sRNAs) and the RNA interference machinery, which have emerged as mediators and carriers of heritable environmentally induced responses. Notwithstanding, it is still unclear how the organism integrates sRNA signaling between different tissues to orchestrate a systemic bacterially induced response that can be inherited. Here we discuss current evidence of heritability produced by the intestinal microbiota from several species. Neurons and gut are the sensing systems involved in transmitting changes through transcriptional and post-transcriptional modifications to the gonads. Germ cells express inflammatory receptors, and their development and function are regulated by host and bacterial metabolites and sRNAs thus suggesting that the dynamic interplay between host and microbe underlies the host’s capacity to transmit heritable behaviors. We discuss how the host detects changes in the microbiota that can modulate germ cells genomic functions. We also explore the nature of the interactions that leave permanent or long-term memory in the host and propose mechanisms by which the microbiota can regulate the development and epigenetic reprogramming of germ cells, thus influencing the inheritance of the host. We highlight the vast contribution of the bacterivore nematode C. elegans and its commensal and pathogenic bacteria to the understanding on how behavioral adaptations can be inter and transgenerational inherited.

Highlights

  • Microbes present in the environment are the most ubiquitous stimuli to which all organisms are exposed

  • We propose that the inheritance of a pathogenic memory requires sensory inputs, to be integrated with internal signaling factors

  • Bacteria create a holobiont system with the host that regulates metabolism, immune responses and behavioral outcomes that influence transgenerationally-inherited strategies to survive pathogenesis

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Summary

INTRODUCTION

Microbes present in the environment are the most ubiquitous stimuli to which all organisms are exposed. Intestinal distention produced by bacteria induces acetylation in histone 4 in germ cells, H4K8ac [116] This mark could be sufficient to inherit pathogen avoidance in the offspring, underlying the still unknown mechanism of crosstalk between sensorial neurons, brain, gut and germline to control transgenerational phenotypes. IFN induces chromatin remodeling and inherited transcriptional immune memory [148], and modifications of histone marks like H4ac, H3K9ac, and H3K4me at IFN-activated promoters [149] These data support the idea that regulation of the host’s immune system controls some aspects of transgenerational inheritance, how microbial-induced cytokine production in the gut may modulate epigenetic changes in germ cells is still mostly unexplored. Future research will be invaluable in resolving how microbial-induced cytokine production influences germ cells and its impact on the host inheritance capacity

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