Abstract

In this study, the genetic diversity and population structure of 205 wild soybean core collections in Northeast China from nine latitude populations and nine longitude populations were evaluated using SSR markers. A total of 973 alleles were detected by 43 SSR loci, and the average number of alleles per locus was 22.628. The mean Shannon information index (I) and the mean expected heterozygosity were 2.528 and 0.879, respectively. At the population level, the regions of 42°N and 124°E had the highest genetic diversity among all latitudes and longitudes. The greater the difference in latitude was, the greater the genetic distance was, whereas a similar trend was not found in longitude populations. Three main clusters (1N, <41°N-42°N; 2N, 43°N-44°N; and 3N, 45°N–>49°N) were assigned to populations. AMOVA analysis showed that the genetic differentiation among latitude and longitude populations was 0.088 and 0.058, respectively, and the majority of genetic variation occurred within populations. The Mantel test revealed that genetic distance was significantly correlated with geographical distance (r = 0.207, p < 0.05). Furthermore, spatial autocorrelation analysis showed that there was a spatial structure (ω = 119.58, p < 0.01) and the correlation coefficient (r) decreased as distance increased within a radius of 250 km.

Highlights

  • The annual wild soybean (Glycine soja Sieb. and Zucc.), the direct progenitor of the cultivated soybean (Glycine max (Linn.) Merr.), is a predominantly self-pollinated annual plant species [1, 2]

  • The results indicate that the genetic diversity of wild soybean accessions in Northeast China is related to their latitudinal origin

  • The rich genetic variation could be attributed to the fact that the samples in this study were selected from the core collection, which has been defined as a subset of a crop species preserved with the most abundant repetitiveness [35, 36]

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Summary

Introduction

The annual wild soybean (Glycine soja Sieb. and Zucc.), the direct progenitor of the cultivated soybean (Glycine max (Linn.) Merr.), is a predominantly self-pollinated annual plant species [1, 2]. Zucc.), the direct progenitor of the cultivated soybean (Glycine max (Linn.) Merr.), is a predominantly self-pollinated annual plant species [1, 2]. It is widely distributed across most provinces of China, with the exceptions of Qinghai, Xinjiang, and Hainan [3]. A total of 48 wild soybean in situ reserves have been established in China, 14 of which are located in Northeast China. A total of 8518 wild soybean accessions have been ex situ conserved in the National Gene Bank, and nearly half were collected from Northeast China [5].

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