Abstract

The genetic algorithm is an optimization routine for finding the solution to a problem that requires a function to be minimized. It accomplishes this by creating a population of solutions and then producing “offspring” solutions from this population by combining two “parental” solutions in much the way that the DNA of biological parents is combined in the DNA of offspring. Strengths of the algorithm include that it is simple to implement, no trial solution is required, and the results are fairly accurate. Weaknesses include its slow computational speed and its tendency to find a local minimum that does not represent the global minimum of the function. By minimizing the elastic, surface, and electric free energies, the genetic algorithm is used to compute the liquid crystal director configuration for a wide range of situations, including one- and two-dimensional problems with various forms of boundary conditions, with and without an applied electric field. When appropriate, comparisons are made with the exact solutions. Ways to increase the performance of the algorithm as well as how to avoid various pitfalls are discussed.

Highlights

  • Noel Clark’s research into the connection between biology and liquid crystals (LCs) represents some of his most important recent scientific work

  • DNA duplexes spontaneously stack in solution, forming longer assemblies that form liquid crystal phases, and (2) mixtures with uneven concentrations of complementary oligomers phase separate into a liquid crystal phase formed by paired strands and an isotropic phase formed by unpaired strands [1]

  • Since the anchoring at the substrates is infinite and there is no applied electric field, FS and FE do not need to be considered. This is the free energy density that is integrated from z = 0 to z = d in the script energyHybridP

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Summary

Introduction

Noel Clark’s research into the connection between biology and liquid crystals (LCs) represents some of his most important recent scientific work. Over a period of a little more than a decade, Noel and his co-workers have discovered the liquid crystal properties and suggested the biological significance of short duplexes of DNA [1,2,3,4,5,6,7,8,9,10,11,12,13]. It all started in 2007 with the discovery that (1) short. This appears to have been the case for the linear rodlike structure of base-paired polynucleotides

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