Abstract

Nitric oxide (NO) is involved in organ development, synaptogenesis, and response to hypoxia in Drosophila. We cloned and analyzed the only gene in the fly genome that encodes Drosophila nitric-oxide synthase (dNOS). It consists of 19 exons and is dispersed over 34 kilobases of genomic DNA. Alternative transcription start sites and alternative splice sites are used to generate a remarkable variety of mRNAs from the dNOS gene. We identified eight new transcripts that are widely expressed throughout Drosophila development and encode a family of DNOS-related proteins. Alternative splicing affects both the 5'-untranslated region and the coding region of the dNOS primary transcript. Most of the splicing alterations in the coding region of the gene lead to premature termination of the open reading frame. As a result, none of the alternative transcripts encode an enzymatically active protein. However, some of these shorter DNOS protein products can effectively inhibit enzymatic activity of the full-length DNOS1 protein when co-expressed in mammalian cells, thus acting as dominant negative regulators of NO synthesis. Using immunoprecipitation, we demonstrate that these short DNOS protein isoforms can form heterodimers with DNOS1, pointing to a physical basis for the dominant negative effect. Our results suggest a novel regulatory function for the family of proteins encoded by the Drosophila NOS gene.

Highlights

  • The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EBI Data Bank with accession number(s) AH009071 and AF215690-AF215700

  • Our data demonstrate that several alternative promoters and splice sites are used in the Drosophila nitric-oxide synthases (NOS) gene to generate a family of transcripts that are expressed throughout fruit fly development

  • We show that the Drosophila nitric-oxide synthase (dNOS) locus codes for a highly complex gene; the enzymatically active DNOS1 form is encoded by 19 exons distributed over a 34-kb region in the Drosophila genome

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Summary

EXPERIMENTAL PROCEDURES

Isolation of the dNOS Genomic Clones—A Drosophila ␭DASH genomic library (5 ϫ 104 plaques) was screened with probes corresponding to different regions of the dNOS1 cDNA [6]. Transfection, NOS Activity Assay, and Immunoblotting—Expression constructs for enzymatic activity assays contained the protein-coding regions of different dNOS cDNAs, each fused in-frame at the 3Ј-ends to the sequence of either the influenza virus hemagglutinin (HA) epitope (dNOS1-HA and dNOS3-HA constructs) or the FLAG epitope (dNOS4FLAG, dNOS5-FLAG, and dNOS6-FLAG constructs) followed by a stop codon These were subcloned into the mammalian expression vector pCG, which uses a strong cytomegalovirus promoter to direct transcription of the transgene [12]. To compare the expression of the dNOS1-HA construct across the co-transfection experiments, equal amounts of protein extracts from the transfected cells were analyzed by SDS-polyacrylamide gel electrophoresis followed by immunoblotting as described [14] using the 12CA5 monoclonal antibody [15] against HA epitope at a final concentration of 10 ␮g/ml. Immunoprecipitated proteins were eluted from the agarose or Sepharose beads by boiling and analyzed by SDS-polyacrylamide gel electrophoresis and immunoblotting

RESULTS
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DISCUSSION
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