Abstract

The German Network for Bioinformatics Infrastructure (de.NBI) is a national and academic infrastructure funded by the German Federal Ministry of Education and Research (BMBF). The de.NBI provides (i) service, (ii) training, and (iii) cloud computing to users in life sciences research and biomedicine in Germany and Europe and (iv) fosters the cooperation of the German bioinformatics community with international network structures. The de.NBI members also run the German node (ELIXIR-DE) within the European ELIXIR network. The de.NBI / ELIXIR-DE training platform, also known as special interest group 3 (SIG 3) 'Training & Education', coordinates the bioinformatics training of de.NBI and the German ELIXIR node. The network provides a high-quality, coherent, timely, and impactful training program across its eight service centers. Life scientists learn how to handle and analyze biological big data more effectively by applying tools, standards and compute services provided by de.NBI. Since 2015, more than 250 training courses were carried out with more than 5,200 participants and these courses received recommendation rates of almost 90% (status as of October 2019). In addition to face-to-face training courses, online training was introduced on the de.NBI website in 2016 and guidelines for the preparation of e-learning material were established in 2018. In 2016, ELIXIR-DE joined the ELIXIR training platform. Here, the de.NBI / ELIXIR-DE training platform collaborates with ELIXIR in training activities, advertising training courses via TeSS and discussions on the exchange of data for training events essential for quality assessment on both the technical and administrative levels. The de.NBI training program trained thousands of scientists from Germany and beyond in many different areas of bioinformatics.

Highlights

  • In the last decade, researchers in the life sciences have been early victims of the ‘Big Data Problem’ because of technical improvements in the so-called ‘omics’ and image analysis fields including the challenges of the five ‘V’s of big data: volume, veracity, velocity, variety, and value[1]

  • The need for such training was described recently: The majority (> 95%) of life scientists located in Europe work or plan to work with large datasets, but less than 35% possess the bioinformatics and statistical skills to handle the huge amount of generated data[2]

  • These training activities of de.NBI are focused on teaching life scientists in Germany and Europe the proper handling and analysis of their biological big data more effectively by applying tools, standards and compute services provided by the service centers

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Summary

Introduction

Researchers in the life sciences have been early victims of the ‘Big Data Problem’ because of technical improvements in the so-called ‘omics’ and image analysis fields including the challenges of the five ‘V’s of big data: volume, veracity, velocity, variety, and value[1]. Life scientists learn how to handle and analyze biological big data more effectively by applying tools, standards and compute services provided by de.NBI. De.NBI offers a large repertoire of high-quality training courses to support life scientists with different expertise levels in bioinformatics and from various research fields.

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