Abstract

Cardiovascular disease collectively accounts for a quarter of deaths worldwide. Genome-wide association studies across a range of cardiovascular traits and pathologies have highlighted the prevalence of common non-coding genetic variants within candidate loci. Here, we review genetic, epigenomic and molecular approaches to investigate the contribution of non-coding regulatory elements in cardiovascular biology. We then discuss recent insights on the emerging role of non-coding variation in predisposition to cardiovascular disease, with a focus on novel mechanistic examples from functional genomics studies. Lastly, we consider the clinical significance of these findings at present, and some of the current challenges facing the field.

Highlights

  • Human individuals differ from each other in millions of DNA sequence variants, some of which contribute to phenotypic differences in physiology and disease predisposition

  • The majority of human loci associated with cardiovascular traits and diseases are not in linkage disequilibrium (LD) with coding exons [4], a large fraction of genetic associations must reflect the effect of variation in gene regulation

  • Here we focus on the two major clinical types of primary cardiomyopathies: hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM)

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Summary

Introduction

Human individuals differ from each other in millions of DNA sequence variants, some of which contribute to phenotypic differences in physiology and disease predisposition. Facilitated by technological advances in sequencing technology, genome-wide association studies (GWAS) have analysed human genetic variation across individuals presenting a range of cardiovascular traits and diseases [1,2,3]. These comprise physiological parameters of cardiovascular function, such as heart rate or electrocardiogram measurements, and common pathologies such as cardiac arrhythmias and coronary artery disease (CAD). We will review recent evidence from genetic studies into the potential role of noncoding DNA elements in cardiovascular physiology and disease, with discussion of mechanistic insights from molecular approaches evaluating the effect of non-coding genetic variation on gene regulation and cellular phenotypes

Genetic association studies in cardiovascular disease
Coronary artery disease and myocardial infarction
Congenital heart disease
Long QT syndrome
Atrial fibrillation
Cardiomyopathies
Experimental approaches for functional annotation of non-coding variation
Epigenetic annotation of non-coding elements
Long-range chromatin interactions
Perturbation of non-coding regions by genome and epigenome editing
Disruption of transcription factor binding sites
30 UTR human cardiomypathies distal enhancers mouse whole organism
Long-range gene regulation
Gene regulation by long non-coding RNAs
Mechanistic insights on complex genetic loci
Clinical significance of cardiovascular non-coding variants
Conclusion and future perspectives
58. Boldt LH et al 2010 Mutational analysis of the
62. Canon S et al 2016 miR-208b upregulation
35. Moretti A et al 2010 Patient-specific induced
52. Gudbjartsson DF et al 2007 Variants conferring risk
40. Smith JG et al 2011 Genome-wide association
79. Osterwalder M et al 2018 Enhancer redundancy
Findings
99. Mumbach MR et al 2017 Enhancer connectome in
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