Abstract
The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.
Highlights
Plastid and mitochondria are essential organelles in plant cells
All the rRNA genes and 7 tRNA genes are located in inverted repeats (IRs) regions
Similar to other dicot species, Bh has two genes located in the position of IR/large-single-copy region (LSC) junctions. This is different in monocots, such as rice and maize, whose cpDNAs have a fully duplicated rps19 gene in the IR/LSC junctions [18]
Summary
Plastid and mitochondria are essential organelles in plant cells. Chloroplasts conduct photosynthesis in the presence of sunlight and mitochondria indirectly supply energy within plant cells; together they form the powerhouses of the cell. Phylogenetic analyses, which were constructed by 63 protein-coding sequences from 12 cp genomes (one green algae as outgroup, one land and 10 seed plants) (Table S2), indicates that the phylogenetic position of B. hygrometrica is closer and older than V. vinifera among the analyzed dicots (Figure S2).
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