Abstract

The heme activator protein Hap1 is a member of the yeast Gal4 family, which consists of transcription factors with a conserved Zn(2)Cys(6) cluster that recognizes a CGG triplet. Many members of the Gal4 family contain a coiled coil dimerization element and bind symmetrically to DNA as homodimers. However, Hap1 possesses two unique properties. First, Hap1 binds asymmetrically to a direct repeat of two CGG triplets. Second, Hap1 binds to two classes of DNA elements, UAS1/CYC1 and UAS/CYC7, and permits differential transcriptional activation at these sites. Here we determined the residues of the Hap1 dimerization domain critical for DNA binding and differential transcriptional activation. We found that the Hap1 dimerization domain is composed of functionally redundant elements that can substitute each other in DNA binding and transcriptional activation. Remarkably, deletion of the coiled coil dimerization element did not severely diminish DNA binding and transcriptional activation at UAS1/CYC1 but completely abolished transcriptional activation at UAS/CYC7. Furthermore, Ala substitutions in the dimerization element selectively diminished transcriptional activation at UAS/CYC7. These results strongly suggest that the coiled coil dimerization element is responsible for differential transcriptional activation at UAS1/CYC1 and UAS/CYC7 and for making contacts with a putative coactivator or part of the transcription machinery.

Highlights

  • The yeast Gal4 family [1] includes at least 52 transcription factors controlling a wide array of diverse processes ranging from carbon source utilization to drug resistance and to amino acid metabolism in the yeast Saccharomyces cerevisiae

  • We examined the roles of amino acid residues in the previously defined Hap1 dimerization domain in DNA binding and transcriptional activation at UAS1/cytochrome c-iso-1 (CYC1) and upstream activation sequences (UASs)/CYC7

  • Sequence-specific DNA binding by the Hap1 deletion mutant lacking the coiled coil dimerization element still requires a complete Hap1 site containing a direct repeat of two CGG/CGC triplets, suggesting that the mutant binds to DNA as a dimer (Figs. 6 and 7)

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Summary

Introduction

The yeast Gal family [1] includes at least 52 transcription factors controlling a wide array of diverse processes ranging from carbon source utilization to drug resistance and to amino acid metabolism in the yeast Saccharomyces cerevisiae (see Munich Information Center for Protein Sequences yeast data base). Hap is unique in this family because the Hap homodimer binds to asymmetric sites containing a direct repeat of two CGG triplets (consensus sequence, CGGnnnTAnCGG; CGC triplets in UAS/CYC7), separated by a six-nucleotide spacer [11, 12] This asymmetry in Hap DNA binding is not dictated by asymmetric dimerization but by an asymmetric interaction between the residues within the zinc cluster of one Hap subunit and the residues immediately N-terminal to the Zn2Cys cluster of the other Hap subunit [7, 12]. How the Hap DNA-binding domain makes these contacts remains unclear

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