Abstract

Cellulosomes are bacterial protein complexes that bind and efficiently degrade lignocellulosic substrates. These are formed by multimodular scaffolding proteins known as scaffoldins, which comprise cohesin modules capable of binding dockerin-bearing enzymes and usually a carbohydrate-binding module that anchors the system to a substrate. It has been suggested that cellulosomes bound to the bacterial cell surface might be exposed to significant mechanical forces. Accordingly, the mechanical properties of these anchored cellulosomes may be important to understand and improve cellulosome function. Here we used single-molecule force spectroscopy to study the mechanical properties of selected cohesin modules from scaffoldins of different cellulosomes. We found that cohesins located in the region connecting the cell and the substrate are more robust than those located outside these two anchoring points. This observation applies to cohesins from primary scaffoldins (i.e. those that directly bind dockerin-bearing enzymes) from different cellulosomes despite their sequence differences. Furthermore, we also found that cohesin nanomechanics (specifically, mechanostability and the position of the mechanical clamp of cohesin) are not significantly affected by other cellulosomal components, including linkers between cohesins, multiple cohesin repeats, and dockerin binding. Finally, we also found that cohesins (from both the connecting and external regions) have poor refolding efficiency but similar refolding rates, suggesting that the high mechanostability of connecting cohesins may be an evolutionarily conserved trait selected to minimize the occurrence of cohesin unfolding, which could irreversibly damage the cellulosome. We conclude that cohesin mechanostability is a major determinant of the overall mechanical stability of the cellulosome.

Highlights

  • Cellulosomes are bacterial protein complexes that bind and efficiently degrade lignocellulosic substrates

  • To test the general applicability of the mechanical hypothesis of cellulosomes, we first studied the mechanical stability of additional cohesin modules from the connecting and external regions of primary scaffoldins, i.e. scaffoldins with cohesins that directly bind dockerin-bearing enzymes

  • We analyzed the mechanical stability of cohesins 1 and 9 from C. thermocellum CipA scaffoldin (CtA1 and CtA9, respectively) as well as cohesins 3 and 4 from A. cellulolyticus ScaA (AcA3 and AcA4, respectively)

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Summary

ARTICLE cro

Some anaerobic bacteria produce a highly organized extracellular complex termed the cellulosome [6] In this system, the action of several enzymes is coordinated by their incorporation into protein scaffolds known as scaffoldins. This is achieved by the high-affinity and specific interaction between dockerin modules, present in the different enzymes, and cohesins, ␤-sandwich–like modules [7, 8] usually found in several tandem repeats in the scaffoldins This strategy allows coordinated action of several complementary enzymes precisely targeted to their substrate by means of a carbohydrate-binding module (CBM)3 [5], resulting in synergistic effects that achieve high specific activities [1]. The mechanical properties of cohesin modules within the connecting regions might be important to understand the functioning of the cellulosome and to design new artificial cellulosomes for industrial applications [11]

Cellulosome nanomechanics
Cohesin nanomechanics in primary scaffoldins
Mechanical stability of cohesins from secondary scaffoldins
Dockerin interaction does not alter cohesin mechanical stability
Refolding kinetics of cohesin modules
Discussion
Protein engineering
Protein expression and purification
SMD simulations
Monte Carlo simulations
Full Text
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