Abstract

Terrestrial plants evolution occurred in the presence of microbes, the phytomicrobiome. The rhizosphere microbial community is the most abundant and diverse subset of the phytomicrobiome and can include both beneficial and parasitic/pathogenic microbes. Prokaryotes of the phytomicrobiome have evolved relationships with plants that range from non-dependent interactions to dependent endosymbionts. The most extreme endosymbiotic examples are the chloroplasts and mitochondria, which have become organelles and integral parts of the plant, leading to some similarity in DNA sequence between plant tissues and cyanobacteria, the prokaryotic symbiont of ancestral plants. Microbes were associated with the precursors of land plants, green algae, and helped algae transition from aquatic to terrestrial environments. In the terrestrial setting the phytomicrobiome contributes to plant growth and development by (1) establishing symbiotic relationships between plant growth-promoting microbes, including rhizobacteria and mycorrhizal fungi, (2) conferring biotic stress resistance by producing antibiotic compounds, and (3) secreting microbe-to-plant signal compounds, such as phytohormones or their analogues, that regulate aspects of plant physiology, including stress resistance. As plants have evolved, they recruited microbes to assist in the adaptation to available growing environments. Microbes serve themselves by promoting plant growth, which in turn provides microbes with nutrition (root exudates, a source of reduced carbon) and a desirable habitat (the rhizosphere or within plant tissues). The outcome of this coevolution is the diverse and metabolically rich microbial community that now exists in the rhizosphere of terrestrial plants. The holobiont, the unit made up of the phytomicrobiome and the plant host, results from this wide range of coevolved relationships. We are just beginning to appreciate the many ways in which this complex and subtle coevolution acts in agricultural systems.

Highlights

  • Another fundamentally important step in the evolution of plants was the endosymbiosis of photosynthetic cyanobacteria that resulted in chloroplasts [18,19]

  • As we argued in a previous paper [11], plants are best conceptualized as holobionts, which takes into account the phytomicrobiome and organelles that are essential to plant survival [84]

  • Plant biologists have begun to understand that the origin, development, and ultimate success of plants is closely linked to plant interactions with the phytomicrobiome

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Summary

Introduction

The sophisticated and complex association between plants and microorganisms, including bacteria and fungi, have existed since the early stages of life on Earth. Cyanobacteria played a pivotal role in formation of algae through endosymbiosis by which a cyanobacterium was incorporated into a het-. The colonization of land plants by fungal and bacterial symbionts was a critical stage to bringing about evolution of terrestrial ecosystems, but how the members of early communities interacted and influenced one another is still relatively unexplored [5]. An expanding body of fossil evidence shows that interactions among early terrestrial communities included bacteria, fungi, algae, lichens, and bryophytes—the ecosystem services provided by these organisms include the weathering of parent rock material, soil formation, stabilization of sediments, and the productivity of ecosystems [6,7]. We propose that the holobiont concept should be incorporated into thinking around agricultural systems based on the role of microbial communities in agro-ecosystems

Endosymbiotic Evolution
Relationships between Microbes and the Precursor of Terrestrial Plants
Microbially-Drived CO2 Fixation
Microbially-Drived
Pathogenic Interactions and the Role of Biocontrol Microbes
Understanding the Plant Holobiont Will Improve Sustainable Agriculture
Findings
Conclusions
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