The Chern‐Simons Current in Systems of DNA‐RNA Transcriptions

Abstract

AbstractA Chern‐Simons current, coming from ghost and anti‐ghost fields of supersymmetry theory, can be used to define a spectrum of gene expression in new time series data where a spinor field, as alternative representation of a gene, is adopted instead of using the standard alphabet sequence of bases . After a general discussion on the use of supersymmetry in biological systems, we give examples of the use of supersymmetry for living organism, discuss the codon and anti‐codon ghost fields and develop an algebraic construction for the trash DNA, the DNA area which does not seem active in biological systems. As a general result, all hidden states of codon can be computed by Chern‐Simons 3 forms. Finally, we plot a time series of genetic variations of viral glycoprotein gene and host T‐cell receptor gene by using a gene tensor correlation network related to the Chern‐Simons current. An empirical analysis of genetic shift, in host cell receptor genes with separated cluster of gene and genetic drift in viral gene, is obtained by using a tensor correlation plot over time series data derived as the empirical mode decomposition of Chern‐Simons current.