The basal food sources for Murray cod (Maccullochella peelii) in wetland mesocosms

Increasing demand for freshwater during the last century has so severely degraded many wetland ecosystems that they are some of the most seriously impacted environments in the world. Environmental flows are used as a management tool to restore parts of the hydrological regime altered by human water use, to rehabilitate these wetlands. Research and monitoring to date has focused on understanding ‘flow-ecology’ relationships, without investigating the mechanisms underlying them. We sought to understand how different basal food sources are incorporated into fish tissue in temporary wetland systems. This study provides a necessary first step toward the development of mechanistic research that investigates the effects of variation in fatty acids (FA) within the food and prey base on top predators. We added different sources of fatty acids to wetland mesocosms by adding extra food sources including redgum leachate to increase planktonic bacteria populations, cyanobacteria, green algae and biofilm matrix to observe how they were incorporated into secondary consumers. Wetland soil and water was added to replicate mesocosms, left for 28 days to produce zooplankton and then Western carp gudgeons added. There was a clear shift in the invertebrate assemblage structure following the introduction of the gudgeons. There was also a clear difference in assemblage structure and nutritional value between benthic and planktonic invertebrates. However, the addition of extra food sources did not generate differing FA profiles between treatments in the substratum fractions, invertebrates or fish after 14 days. We suggest that food sources generated within the mesocosms themselves may have outweighed any treatment effects. Using flooded wetland mesocosms potentially would have provided more realistic knowledge of the food web mechanisms of wetland inundation rather than feeding zooplankton fed specific primary food sources to fish. However, future experiments attempting to identify the mechanisms of the transfer of basal food sources in wetlands to secondary consumers may wish to directly feed fish primary consumers raised on specific basal food sources.

An outline of a method used to sample Murray cod larvae in an Australian upland river system.

Recreational fishery management aims to prevent species decline and provide sustainable fisheries. Overfishing has been frequently suggested as a cause of historic fishery declines within the Murray–Darling Basin (MDB), Australia, but there have been few quantitative surveys for providing fishery-dependent data to gauge status. The Murray Cod Maccullochella peelii and the Golden Perch Macquaria ambigua are important species targeted by recreational fishers across the MDB. The fisheries are controlled by size and bag limits and gear restrictions (both species) as well as a closed season (Murray Cod only). A complemented fisher survey design was used to assess the recreational fishery for both species in a 76-km reach of the Murrumbidgee River in 2012–2013. Progressive counts were used to quantify boat- and shore-based fishing effort. Catch and harvest rate information was obtained from shore-based fishers via roving surveys and from boat-based fishers via bus route surveys. Murray Cod catch rates (fish/angler-hour) were 0.228 ± 0.047 (mean ± SE; boat based) and 0.092 ± 0.023 (shore based), and harvest rates (fish/angler-hour) were 0.013 ± 0.006 (boat based) and 0.003 ± 0.001 (shore based). Golden Perch catch rates were 0.018 ± 0.009 (shore based) and 0.002 ± 0.001 (boat based), and harvest rates were 0.006 ± 0.002 (shore based) and 0.001 ± <0.001 (boat based). The Murray Cod fishery had maximal catch and harvest during the 5-month period after the closed season ended. The closed season aims to protect spawning Murray Cod, but this strategy's effectiveness may have been influenced by high fishing effort and deliberate bycatch during the closure period. To sustain and improve these MDB fisheries, we suggest quantification of catch-and-release impacts on spawning Murray Cod, provision of fish passage, re-stocking of Golden Perch, and education on fishing techniques that minimize Murray Cod bycatch during the closed season. Received October 22, 2014; accepted March 6, 2015

Mating strategies in fishes are known to include polygyny, polyandry and monogamy and provide valuable insights regarding powerful evolutionary forces such as sexual selection.Monogamy is a complex of mating systems that has been relatively neglected.Previous work on mating strategies in fishes has often been based on observation and focused on marine species rather than freshwater fishes.SNPs are increasingly being used as a molecular ecology tool in non-model organisms, and methods of probabilistic genetic analysis of such datasets are becoming available for use in the absence of parental genotypes.This approach can be used to infer mating strategies.The long-term pair bonding seen in mammals, reptiles and birds has not been recorded in freshwater fishesin every other respect an extremely diverse group.This study shows that multi-year pair bonding occurs in an Australian Percichthyid fish that exhibits paternal care of eggs and larvae.Using SNPs, full sibling pairs of larvae were found over multiple years in a threeyear study.Stable isotope signatures of the larvae support the genetic inference that full sibling pairs shared a common mother, the ultimate source of that isotopic signature during oogenesis.Spatial and temporal clustering also suggests that the full sibling larvae are unlikely to be false positive identifications of the probabilistic identification of siblings.For the first time, we show multi-year pair bonding in a wild freshwater fish.This will have important conservation and management implications for the species.This approach could provide insights into many behavioural, ecological and evolutionary questions, particularly if this is not a unique case.Our findings are likely to initiate interest in seeking more examples of monogamy and alternative mating strategies in freshwater fishes, particularly if others improve methods of analysis of SNP data for identification of siblings in the absence of parental genotypes.

Mating strategies in fishes are known to include polygyny, polyandry and monogamy and provide valuable insights regarding powerful evolutionary forces such as sexual selection.

Mating strategies in fishes are known to include polygyny, polyandry and monogamy and provide valuable insights regarding powerful evolutionary forces such as sexual selection.Monogamy is a complex of mating systems that has been relatively neglected.Previous work on mating strategies in fishes has often been based on observation and focused on marine species rather than freshwater fishes.SNPs are increasingly being used as a molecular ecology tool in non-model organisms, and methods of probabilistic genetic analysis of such datasets are becoming available for use in the absence of parental genotypes.This approach can be used to infer mating strategies.The long-term pair bonding seen in mammals, reptiles and birds has not been recorded in freshwater fishesin every other respect an extremely diverse group.This study shows that multi-year pair bonding occurs in an Australian Percichthyid fish that exhibits paternal care of eggs and larvae.Using SNPs, full sibling pairs of larvae were found over multiple years in a threeyear study.Stable isotope signatures of the larvae support the genetic inference that full sibling pairs shared a common mother, the ultimate source of that isotopic signature during oogenesis.Spatial and temporal clustering also suggests that the full sibling larvae are unlikely to be false positive identifications of the probabilistic identification of siblings.For the first time, we show multi-year pair bonding in a wild freshwater fish.This will have important conservation and management implications for the species.This approach could provide insights into many behavioural, ecological and evolutionary questions, particularly if this is not a unique case.Our findings are likely to initiate interest in seeking more examples of monogamy and alternative mating strategies in freshwater fishes, particularly if others improve methods of analysis of SNP data for identification of siblings in the absence of parental genotypes.

The Murray Cod Maccullochella peelii and Golden Perch Macquaria ambigua are important recreational species in Australia's Murray–Darling Basin (MDB); both species have declined substantially, but recovery is evident in some areas. Minimum length limits (MLLs)—implemented to ensure fish could spawn at least once prior to harvest eligibility—have increased three times in the past decade. We quantified variation in length at 50% maturity (LM50), age at 50% maturity (AM50), and von Bertalanffy growth parameters (k = Brody growth coefficient; L∞ = asymptotic length; t0 = theoretical age at zero length) of these species within two rivers and two reservoirs of the MDB; to investigate whether fish length is a suitable surrogate for AM50 in setting MLLs. Between 2006 and 2013, we collected 1,118 Murray Cod and 1,742 Golden Perch by electrofishing and gillnetting. Values of k and L∞ were greater for reservoir fish than for riverine fish. For both species, AM50 was generally greater in rivers than in reservoirs; for Murray Cod, LM50 was greater in reservoirs than in rivers. A yield-per-recruit model demonstrated that smaller Murray Cod MLLs would be required for rivers and that an MLL at or below 600 mm (the existing MLL) across all populations could lead to overfishing in some systems. The differences in growth rate and the onset of reproductive maturation between riverine and reservoir populations suggest that system-specific regulations would be more effective at reducing the overfishing risk and meeting fishing quality objectives. Received August 18, 2014; accepted September 10, 2015

Instream barriers, such as dams, culverts, and diversions, alter hydrologic processes and aquatic habitat. Removing uneconomical and aging instream barriers is increasingly used for river restoration. Historically, selection of barrier removal projects used score‐and‐rank techniques, ignoring cumulative change and the spatial structure of stream networks. Likewise, most water supply models prioritize either human water uses or aquatic habitat, failing to incorporate both human and environmental water use benefits. Here, a dual‐objective optimization model identifies barriers to remove that maximize connected aquatic habitat and minimize water scarcity. Aquatic habitat is measured using monthly average streamflow, temperature, channel gradient, and geomorphic condition as indicators of aquatic habitat suitability. Water scarcity costs are minimized using economic penalty functions while a budget constraint specifies the money available to remove barriers. We demonstrate the approach using a case study in Utah's Weber Basin to prioritize removal of instream barriers for Bonneville cutthroat trout, while maintaining human water uses. Removing 54 instream barriers reconnects about 160 km of quality‐weighted habitat and costs approximately US$10 M. After this point, the cost‐effectiveness of removing barriers to connect river habitat decreases. The modeling approach expands barrier removal optimization methods by explicitly including both economic and environmental water uses.

Murray cod is a top-order carnivore with high culture potential. Currently, there are no commercial diets formulated specifically for Murray cod. In this study, results of two growth trials on Murray cod (80–83.5-g mean initial weight), conducted in commercial settings, using two laboratory-formulated diets (DU1 and DU2; 48.9% and 49.1% protein, and 16.9% and 16.1% lipid, respectively, on a dry matter basis), and two commercial diets, formulated for other species (salmon – CD/S and barramundi – CD/B) but used in Murray cod farming are presented. The two commercial diets had less protein (46.6% and 44.4%) but higher lipid (21.7% and 19.5%). The energy content of the feeds tested was similar (about 20–22 kJ g−1). The growth performance and feed utilization of Murray cod did not differ significantly amongst the diets, but the food conversion ratio and % protein efficiency ratio in fish fed the DU1 and DU2 diets were consistently better. There was significantly less carcass and muscle lipid deposition in fish fed with the latter diets. Of the fatty acids in muscle, the lowest amounts (in μg mg lipid−1) of n-3 (262.5±2.9), n-6 (39.8±0.9) and polyunsaturated fatty acid (PUFA) (302.3±3.8) were observed in fish fed CD/S, and the highest in fish fed DU2 and CD/B. Fatty acids 16:0 and 18:0, 18:1n-9 and 16:1n-7, and 22:6n-3, 20:5n-3, 22:5n-3 and 18:2n-6 were the dominant fatty acids amongst the saturates, monoenes and PUFA, respectively, and accounted for 80.8–88.7% of all identified fatty acids (23) in muscle of Murray cod. The study showed that Murray cod could be cultured successfully on a diet (DU2) containing 20% soybean meal without compromising growth and/or carcass quality. Differences in the proximate composition and fatty acid composition of muscle of wild and farmed Murray cod were observed, the most obvious being in the latter. Wild Murray cod had significantly less (P<0.05) saturates (192.6±1.84 vs. 266.3±3.51), monoenes (156.5±8.7 vs. 207.6±6.19), n-3 (145.2±5.24 vs. 261.8±3.2) but higher n-6 (144.3±2.73 vs. 48.3±1.38) in muscle (all values are in μg mg lipid−1) than in farmed fish. Wild fish also had a much lower n-3 to n-6 ratio (1.0±0.03 vs. 5.4±0.09).

Genetic variation is critical to the persistence of populations and their capacity to adapt to environmental change. The distribution of genetic variation across a species' range can reveal critical information that is not necessarily represented in species occurrence or abundance patterns. We identified environmental factors associated with the amount of intraspecific, individual-based genetic variation across the range of a widespread freshwater fish species, the Murray cod Maccullochella peelii. We used two different approaches to statistically quantify the relative importance of predictor variables, allowing for nonlinear relationships: a random forest model and a Bayesian approach. The latter also accounted for population history. Both approaches identified associations between homozygosity by locus and both disturbance to the natural flow regime and mean annual flow. Homozygosity by locus was negatively associated with disturbance to the natural flow regime, suggesting that river reaches with more disturbed flow regimes may support larger, more genetically diverse populations. Our findings are consistent with the hypothesis that artificially induced perennial flows in regulated channels may provide greater and more consistent habitat and reduce the frequency of population bottlenecks that can occur frequently under the highly variable and unpredictable natural flow regime of the system. Although extensive river regulation across eastern Australia has not had an overall positive effect on Murray cod numbers over the past century, regulation may not represent the primary threat to Murray cod survival. Instead, pressures other than flow regulation may be more critical to the persistence of Murray cod (for example, reduced frequency of large floods, overfishing and chemical pollution).

Because of the high costs of collecting field data, many species recovery and management plans do not include a monitoring feedback component to measure the success of interventions and refine management strategies. Here, we demonstrate how leveraging existing monitoring data can provide broad-scale, cost-effective information about a threatened fish species, the Murray Cod Maccullochella peelii, which is of cultural and recreational importance in Australia. We applied a Bayesian hierarchical model of abundance to Murray Cod catch data collected as part of broad-scale, general condition monitoring in the Murray–Darling Basin. The model uses replicated sampling at spatially independent sites to disentangle the confounding effects of detection probability and abundance on catch data. We demonstrate the reliability of the analysis for determining trends in abundance with a simulation study, and we show that basinwide abundance of Murray Cod declined by over 50% between 2010 and 2013. We found that detection probability of Murray Cod can vary substantially across space and through time, suggesting that accounting for variable detection will be important in any future evaluation of Murray Cod populations. This study highlights variable detection as an issue in monitoring regimes and demonstrates a method for the cost-effective use of existing monitoring data to evaluate species abundance trends.

Combining bio-telemetry and underwater imagery to elucidate the reproductive behaviour of a large, long-lived Australian freshwater teleost

Context Entrainment and removal of fish from aquatic ecosystems can occur at water pump offtakes. Exclusion screens that reduce these impacts are recognised as an important conservation measure. Aims Evaluate the effectiveness of the Australian screen design guidelines in protecting larvae and young-of-year age class of a native fish species, Murray cod Maccullochella peelii. Methods Entrainment and impingement of postflexion larvae and young-of-year were assessed in a controlled laboratory environment. Tests were conducted under a range of approach velocities (AV) and impingement durations for two screen materials. Key results Fish screens reduced larval entrainment by ≤84%. Screens had no significant effect on reducing larval entrainment at AV ≥0.125 m s−1. Impingement of young-of-year was positively associated with AV and mortality increased with impingement duration, irrespective of screen type. Conclusions To protect early life-stage Murray cod, it is recommended that water pump offtakes be fitted with 2-mm vertical wedge-wire stainless steel screens and AV be limited to ≤0.1 m s−1. Implications This study represents the first assessment of the effectiveness of the Australian screen design guidelines in protecting larvae, providing knowledge to further refine specifications for screen design and support the recovery of native fish populations.

Short‐term (≤4 days) post‐release mortalities of two large, culturally and ecologically important Australian freshwater teleosts golden perch Macquaria ambigua (Richardson) and Murray cod Maccullochella peelii (Mitchell) were investigated. There was no angler‐induced mortality among golden perch that were immediately released in winter and spring, but 24% of this species and 15% of Murray cod died after delayed release in summer. Significant predictors of mortality were limited to times caught and total length for golden perch, and restraint methods and recovery times for Murray cod, but other parameters were also implicated as cumulative influences. The estimated mortalities may be sufficient to produce population‐level impacts for these two long‐lived species but could be considerably reduced through revisions of tournament regulations.

Fatty acids as dietary biomarkers in mangrove ecosystems: Current status and future perspective