Abstract

The progressive building of the infants’ gut microbiota is pivotal for educating their immune system. Human breast milk is among the first sources of microbes for the assembly of the infant’s microbiota, but research struggles to give a demonstration for the origin of bacteria in milk. Aiming at contributing to the knowledge on assembly of the mother’s milk and infant’s microbiome, here we characterized the oral, gut and milk ecosystems in a homogeneous cohort of 36 healthy mother–infants pairs, by 16S rRNA next-generation sequencing. A limited number of operational taxonomic units (OTUs) was shared among the three ecosystems, including not only OTUs assigned to the well-known immune-modulating Bifidobacterium genus, but also specific Streptococcus and Staphylococcus OTUs, which were dominant in the infant’s mouth ecosystem. The high conservation of these OTUs among the three ecosystems seems to call for a worth exploring ecological role through targeted and/or culture-dependent techniques. Notwithstanding the limitations of a 16S rRNA gene-based molecular characterization, we might hypothesize that the baby’s mouth, being the transition point for the milk to reach the intestine, could play a role in both the gut microbiota assembly, via deglutition, and mother’s milk duct colonization, during suction.

Highlights

  • The microbiota of individuals with whom a human being has direct and frequent contacts contributes in shaping its microbial communities (Stahringer et al, 2012; Song et al, 2013)

  • The extracted bacterial DNA was phylogenetically characterized by 16S rRNA gene (V3–V4 region) Illumina sequencing

  • Reads were clustered in 7,524 operational taxonomic units (OTUs) at 97% of identity

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Summary

Introduction

The microbiota of individuals with whom a human being has direct and frequent contacts contributes in shaping its microbial communities (Stahringer et al, 2012; Song et al, 2013). This is even more true in the case of breastfed infants and their mothers, where the microbial ecosystems of the latter are the most relevant sources of colonizing microbes for the former (Arrieta et al, 2014). The understanding of the colonization dynamics of the infant’s gut microbiota is fascinating from the ecological point of view, and incredibly relevant for clinical immunology (Arrieta et al, 2015; Honda and Littman, 2016).

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