Abstract

The minor U12 introns are removed from precursor mRNAs by the U12 intron-specific minor spliceosome. Among the seven ribonucleoproteins unique to the minor spliceosome, denoted as U11/U12-20K, U11/U12-25K, U11/U12-31K, U11/U12-65K, U11-35K, U11-48K, and U11-59K, the roles of only U11/U12-31K and U11/U12-65K have been demonstrated in U12 intron splicing and plant development. Here, the functional role of the Arabidopsis homolog of human U11-48K in U12 intron splicing and the development of Arabidopsis thaliana was examined using transgenic knockdown plants. The u11-48k mutants exhibited several defects in growth and development, such as severely arrested primary inflorescence stems, formation of serrated leaves, production of many rosette leaves after bolting, and delayed senescence. The splicing of most U12 introns analyzed was impaired in the u11-48k mutants. Comparative analysis of the splicing defects and phenotypes among the u11/u12-31k, u11-48k, and u11/12-65k mutants showed that the severity of abnormal development was closely correlated with the degree of impairment in U12 intron splicing. Taken together, these results provide compelling evidence that the Arabidopsis homolog of human U11-48K protein, as well as U11/U12-31K and U11/U12-65K proteins, is necessary for correct splicing of U12 introns and normal plant growth and development.

Highlights

  • Forward: ATGGATCGACCACCGTCGTT Reverse: TGGGCAACGAAGTGAATGAAGAA Forward: CTTTAGAGTCGAAGAACGCGGTATGC Reverse: GAGAACTCTGTGATCGTGTAGGTGAG Forward: CGATATAGCAGTGGAGTATCCATGC Reverse: GGCAACTCATCAAGATGAGGTTGAAG Forward: GGGAAGAGTTTGCTTGCCCTTTCTG Reverse: CCTCCAAAGAGGCTCTGAAAGTTTCC Forward: CAGAGTTTATATGCCCTTTTTGCGCTG Reverse: GAAGATCCACCAAGAAGAGACTGTAG Forward: GGTAAGCTAATGAGTCCAGAAAGTAC Reverse: CATGGACTGTATGCATGGAGTGAC Forward: GAAGGTTGCTATTGTTAATCTGGATCC Reverse: CTTGCATCAATGCCGGCAAATATG Forward: GAGAGGATACTGAAGATGCAGTCAAG Reverse: CTTCTTGAGTTATCGCGGCCATAG Forward: CGTGGTTTAATTTCCACGAAGAGTTC Reverse: GAAGAGTATAGAAACAATGCCGGAG Forward: GTTGGTGGTTTAGCGAACATCTCGAAC Reverse: CGATACGATGCCAGATAGACTGAGAC Forward: CATGCTTGCCTATTGCTTCTAGCTC Reverse: CAACAGCTGTTGGTGCTATTTCGC Forward: GTTCCTGATGAACCCTCTAATGTCC Reverse: GTGATCTCGTAGCAGTGGATTCTTC Forward: GAATGGCAAACCACTTCACCTAG Reverse: GTCATCATCTTGCTTGGCTTTGAC Forward: GGTCATTGTTCTTGGAGATAGCGG Reverse: GAGGAACTCTGTGTGCCAGTTATTG Forward: GATTATTATGGATACCCAGATGGTCCC Reverse: GCATATTCCCTAATACCAAGTACACTG Forward: GATTTGACTGTTATACAATGTCAAC Reverse: GCAAGTATATAACCGGGTCTC Forward: TAGCCACTAATACAAAATGTCTGG Reverse: TCCTCCTCCGGTTTTTTAAATC Forward: TGCTTATGGACCGAAACGC Reverse: TTCAAGCTCGTTCCTCTCAG Forward: GCTGACAAGCATGTACGTTAC Reverse: CAACGCAGCAGAAAATTTGTC Forward: GAAGATGAAGTTGTGTCATGGG Reverse: ATGAGACTCCGCTCCAGGTG Forward: AAGCTCTTAAGTGTAGCAGAAAAG Reverse: CTTGTTAACGAGATCAACTGCC Forward: CGCAAATTGATTCGCAGAGTCAATTGC Reverse: GAATATCATCAGCAGACATTGGGCG Forward: GATCAGATTGGCATAGACTCTGAACG Reverse: GACGGATGATCATTAGGAGTATAGCC Forward: CAGCAGAGCGGGAAATTGTAAGAG Reverse: TTCCTTTCAGGTGGTGCAACGAC.

  • At3g04160 (U11-48K) At1g56280 (Di19-1) At1g02750 (Di19-2) At3g05700 (Di19-3) At3g06760 (Di19-4) At2g30470 (HSI2) At5g22370 (QQT1) At5g44200 (CBP20) At1g54370 (NHX5) At1g79610 (NHX6) At2g36010 (E2FA/E2F3) At5g22220 (E2FB/E2F1) At5g03740 (HDT3) At2g21880 (RabG2) At1g16540 (ABA3/los5) At2g41740 (VLN2) At3g57410 (VLN3) At3g04630 (WDL1) At5g12210 (RGTB1) At3g12070 (RGTB2) At3g51460 (RHD4) At4g02560 (LD) At5g27380 (GSH2) Actin

  • HSI2 QQT1 NHX5 NHX6 E2FA E2FB HDT3 GSH2 LD ABA3 Di19-1 Di19-2 CBP20

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Summary

Introduction

Forward: ATGGATCGACCACCGTCGTT Reverse: TGGGCAACGAAGTGAATGAAGAA Forward: CTTTAGAGTCGAAGAACGCGGTATGC Reverse: GAGAACTCTGTGATCGTGTAGGTGAG Forward: CGATATAGCAGTGGAGTATCCATGC Reverse: GGCAACTCATCAAGATGAGGTTGAAG Forward: GGGAAGAGTTTGCTTGCCCTTTCTG Reverse: CCTCCAAAGAGGCTCTGAAAGTTTCC Forward: CAGAGTTTATATGCCCTTTTTGCGCTG Reverse: GAAGATCCACCAAGAAGAGACTGTAG Forward: GGTAAGCTAATGAGTCCAGAAAGTAC Reverse: CATGGACTGTATGCATGGAGTGAC Forward: GAAGGTTGCTATTGTTAATCTGGATCC Reverse: CTTGCATCAATGCCGGCAAATATG Forward: GAGAGGATACTGAAGATGCAGTCAAG Reverse: CTTCTTGAGTTATCGCGGCCATAG Forward: CGTGGTTTAATTTCCACGAAGAGTTC Reverse: GAAGAGTATAGAAACAATGCCGGAG Forward: GTTGGTGGTTTAGCGAACATCTCGAAC Reverse: CGATACGATGCCAGATAGACTGAGAC Forward: CATGCTTGCCTATTGCTTCTAGCTC Reverse: CAACAGCTGTTGGTGCTATTTCGC Forward: GTTCCTGATGAACCCTCTAATGTCC Reverse: GTGATCTCGTAGCAGTGGATTCTTC Forward: GAATGGCAAACCACTTCACCTAG Reverse: GTCATCATCTTGCTTGGCTTTGAC Forward: GGTCATTGTTCTTGGAGATAGCGG Reverse: GAGGAACTCTGTGTGCCAGTTATTG Forward: GATTATTATGGATACCCAGATGGTCCC Reverse: GCATATTCCCTAATACCAAGTACACTG Forward: GATTTGACTGTTATACAATGTCAAC Reverse: GCAAGTATATAACCGGGTCTC Forward: TAGCCACTAATACAAAATGTCTGG Reverse: TCCTCCTCCGGTTTTTTAAATC Forward: TGCTTATGGACCGAAACGC Reverse: TTCAAGCTCGTTCCTCTCAG Forward: GCTGACAAGCATGTACGTTAC Reverse: CAACGCAGCAGAAAATTTGTC Forward: GAAGATGAAGTTGTGTCATGGG Reverse: ATGAGACTCCGCTCCAGGTG Forward: AAGCTCTTAAGTGTAGCAGAAAAG Reverse: CTTGTTAACGAGATCAACTGCC Forward: CGCAAATTGATTCGCAGAGTCAATTGC Reverse: GAATATCATCAGCAGACATTGGGCG Forward: GATCAGATTGGCATAGACTCTGAACG Reverse: GACGGATGATCATTAGGAGTATAGCC Forward: CAGCAGAGCGGGAAATTGTAAGAG Reverse: TTCCTTTCAGGTGGTGCAACGAC. At3g04160 (U11-48K) At1g56280 (Di19-1) At1g02750 (Di19-2) At3g05700 (Di19-3) At3g06760 (Di19-4) At2g30470 (HSI2) At5g22370 (QQT1) At5g44200 (CBP20) At1g54370 (NHX5) At1g79610 (NHX6) At2g36010 (E2FA/E2F3) At5g22220 (E2FB/E2F1) At5g03740 (HDT3) At2g21880 (RabG2) At1g16540 (ABA3/los5) At2g41740 (VLN2) At3g57410 (VLN3) At3g04630 (WDL1) At5g12210 (RGTB1) At3g12070 (RGTB2) At3g51460 (RHD4) At4g02560 (LD) At5g27380 (GSH2) Actin

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