Abstract

Central hallmark of Alzheimer's disease are senile plaques mainly composed of β-amyloid, which is a cleavage product of the amyloid precursor protein (APP). The physiological function of APP and its family members APLP1 and APLP2 is poorly understood. In order to fill this gap, we established a cell-culture based model with simultaneous knockdown of all members of the family. A comprehensive proteome study of the APP/APLP1/APLP2 knockdown cell lysates versus controls revealed significant protein abundance changes of more than 30 proteins. Targeted validation of selected candidates by immunoblotting supported the significant down-regulation of the methionine adenosyltransferase II, alpha (MAT2A) as well as of peroxiredoxin 4 in the knockdown cells. Moreover, MAT2A was significantly down-regulated at the mRNA level as well. MAT2A catalyzes the production of S-adenosylmethionine from methionine and ATP, which plays a pivotal role in the methylation of neurotransmitters, DNA, proteins, and lipids. MAT2A-dependent significant up-regulation of S-adenosylmethionine was also detectable in the knockdown cells compared with controls. Our results point to a role of the APP family proteins in cellular methylation mechanisms and fit to findings of disturbed S-adenosylmethionine levels in tissue and CSF of Alzheimer disease patients versus controls. Importantly, methylation plays a central role for neurotransmitter generation like acetylcholine pointing to a crucial relevance of our findings for Alzheimer's disease. In addition, we identified differential gene expression of BACE1 and PSEN1 in the knockdown cells, which is possibly a consequence of MAT2A deregulation and may indicate a self regulatory mechanism.

Highlights

  • From the ‡Functional Proteomics, Medizinisches Proteom-Center, Ruhr-University Bochum, D-44801 Bochum, Germany; §Institute of Physiological Chemistry, System Biochemistry, Ruhr-University Bochum, D-44780 Bochum, Germany; ¶Medizinisches Proteom-Center, Ruhr-University Bochum, D-44801 Bochum, Germany; ʈCenter for Neuropathology and Prion Research, Ludwig-Maximilians-University Munich, D-81377 Munich, Germany

  • A cell culture model with a triple simultaneous knockdown of amyloid precursor protein (APP), APLP1, and APLP2 was established, which was subsequently used for the analysis of protein abundances versus controls

  • We established a knockdown model of APP and its highly homologous family members APLP1 and APLP2 in HEK293T cells

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Summary

EXPERIMENTAL PROCEDURES

Cell Culture—The APP/APLP1/APLP2 knockdown was established by simultaneous transfection with GIPZ lentiviral shRNAmir vectors (Open Biosystems, Huntsville, AL) in HEK293T cells. The APLP2 blot was probed with a full length APLP2 antibody (Cat no: 171617; Calbiochem, San Diego, CA) using a dilution of 1:500 in StartingBlockTM TBS Blocking Buffer and 25 ␮g total protein. The MAT2A blot was probed with a MAT2A antibody (dilution factor 1:1000, 15 ␮g total protein, Cat no: ab77471; Abcam, Cambridge, UK). The PRDX4 blot was probed with a PRDX4 antibody (dilution factor 1:1000 in StartingBlockTM TBS Blocking Buffer, 25 ␮g total protein, Cat no: ab59542; Abcam). Total cell lysates (20 ␮g each lane) were separated by SDSPAGE with 4 –12% NuPAGETM Bis-Tris Gel (Invitrogen) and stained with ImperialTM Protein Stain (Thermo Scientific). The data associated with this manuscript may be downloaded from the ProteomeCommons.org Tranche network using the following hash: shRNAmir APP (used for main experiment) APP (used for OFF-TARGET preclusion) APLP1 (used for main experiment) APLP1 (used for OFF-TARGET preclusion) APLP2 (used for main experiment) APLP2 (used for OFF-TARGET preclusion) Non-silencing-control mRNA

Antisense primer
RESULTS
Gel slice***
DISCUSSION
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