Abstract
Key messageFluorescence in situ hybridization with probes for 45 cDNAs and five tandem repeats revealed homoeologous relationships of Agropyron cristatum with wheat. The results will contribute to alien gene introgression in wheat improvement.Crested wheatgrass (Agropyron cristatum L. Gaertn.) is a wild relative of wheat and a promising source of novel genes for wheat improvement. To date, identification of A. cristatum chromosomes has not been possible, and its molecular karyotype has not been available. Furthermore, homoeologous relationship between the genomes of A. cristatum and wheat has not been determined. To develop chromosome-specific landmarks, A. cristatum genomic DNA was sequenced, and new tandem repeats were discovered. Their distribution on mitotic chromosomes was studied by fluorescence in situ hybridization (FISH), which revealed specific patterns for five repeats in addition to 5S and 45S ribosomal DNA and rye subtelomeric repeats pSc119.2 and pSc200. FISH with one tandem repeat together with 45S rDNA enabled identification of all A. cristatum chromosomes. To analyze the structure and cross-species homoeology of A. cristatum chromosomes with wheat, probes for 45 mapped wheat cDNAs covering all seven chromosome groups were localized by FISH. Thirty-four cDNAs hybridized to homoeologous chromosomes of A. cristatum, nine hybridized to homoeologous and non-homoeologous chromosomes, and two hybridized to unique positions on non-homoeologous chromosomes. FISH using single-gene probes revealed that the wheat-A. cristatum collinearity was distorted, and important structural rearrangements were observed for chromosomes 2P, 4P, 5P, 6P and 7P. Chromosomal inversions were found for pericentric region of 4P and whole chromosome arm 6PL. Furthermore, reciprocal translocations between 2PS and 4PL were detected. These results provide new insights into the genome evolution within Triticeae and will facilitate the use of crested wheatgrass in alien gene introgression into wheat.
Highlights
Among wild relatives of cultivated Triticeae, the genus Agropyron is a promising donor of important traits for improvement of bread wheat (Triticum aestivum L., 2n = 6x = 42, genome AABBDD)
Fluorescence in situ hybridization (FISH) with a probe for 45S rDNA showed four hybridization sites on the short arm of two chromosome pairs corresponding to two pairs of nucleolus organizing regions (NOR)
The 5S rDNA probe showed signals in a subterminal position of the short arms of one of the chromosome pairs carrying 45S rDNA locus. This chromosome pair was identified based on cDNA mapping as 5P, while the other pair was identified as 1P, which is characterized by secondary constriction and a satellite on the short arm
Summary
As alien gene transfer by interspecific hybridization is affected by chromosome collinearity, it is important to establish syntenic relationships between chromosomes of the donor alien species and wheat (Friebe et al 1996; Qi et al 2007; Feuillet et al 2008). If collinearity between the donor and recipient genomes is broken down due to evolutionary chromosome rearrangements, gene transfer by homoeologous chromosome recombination may result in progenies with non-balanced genomes (Devos et al 1993; Zhang et al 1998). Han et al (2014) found that the A. cristatum chromosome 6P differs from wheat homoeologs by large rearrangements. This observation underlines the need for detailed analysis of the structures of all A. cristatum chromosomes. The ability to identify A. cristatum chromosomes would open avenues for the detection of introgressed chromosomes and their segments in the genetic background of other Triticeae species
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