Thaumatin protein predicted from oil palm and rubber using PHYRE2 and SWISS-MODEL software

Abstract

Thaumatin-like proteins play important roles in plant defense responses. The protein sequence of a thaumatin gene was found from the NCBI database and analyzed using PHYRE2 and SWISS-MODEL software. The oil palm showed that the total different protein modeling determines by SWISS-MODEL. In addition, the binding site predicted in oil palm has three model proteins CYS, GLN, and TYR using PHYRE2. Another case, distinct in rubber model protein which just has two kind proteins (THR and TYR). The image of the structural proteins revealed that c2ahnA differences were performed using PHYRE2. While, the 2ahn.1.A structure protein had the closest homology image effects in the oil palm and rubber using SWISS-MODEL. The extracellular-cytoplasmic from oil palm was constructed in 19-34 membranes. But different helix, an extracellular-cytoplasmic from rubber was constructed in 22-37 membranes (N-C terminal).