Abstract

Large, publicly available data sets present a challenge and an opportunity for researchers based in Low and Middle Income Countries (LMIC). The challenge for these researchers is how they can make use of such data sets given their poor connectivity and infrastructure. The opportunity is the ability to perform leading edge research using these data sets and hence avoid having to invest substantial resources in generating the data sets. The offshoot of this will be to generate solutions to the substantial local problems encountered in these countries and create an educated workforce in data science. Cloud computing in particular may well close the infrastructural gap here. In this paper we discuss our experiences of teaching a variety of summer schools on data intensive analysis in bioinformatics in China, Namibia and Malaysia. On the basis of these experiences we propose that a larger series of summer schools in data science and cloud computing in LMIC would create a cadre of data scientists to start this process. We finally discuss the possibility of the provision of cloud computing resources where the usage costs are controlled so that it is affordable for LMIC researchers.

Highlights

  • Access to research data in the public domain and the computational resources to analyse them, will give LMIC researchers the infrastructure to enhance world-class research that is relevant to their society

  • If remote computing based on cloud platforms are to be used software which makes more extensive use of the command line will be necessary. This will require a significant rewrite of the lecturing materials but as the focus is moving towards data science in any respect, this is timely

  • A short-course based on the CCC model was developed for presentation at the University of Namibia, Wind-hoek Campus (2013), and The University of Nottingham in Malaysia (UNIM), Kuala Lumpur Campus (2013, 2014)

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Summary

Opportunities from Large Data And Open Data

Freely accessible, research data sets are expanding in frequency and size. In Bioinformatics in particular, there are already extensive data collections publicly available. Access to research data in the public domain and the computational resources to analyse them, will give LMIC researchers the infrastructure to enhance world-class research that is relevant to their society These data sets are often too large to download on high-speed connections in high income countries, let alone LMIC networks. The creation of a cadre of individuals who can analyse, maintain and curate data sets will be an important skill which will positively impact the local society as enterprises based on data analysis will expand. Teaching these topics in LMIC is not trivial and it is instructive to consider a number of case studies from a variety countries.

Case studies
Namibia and Malaysia
Extended Summer Schools In LMIC
Curriculum and structure
Number of days Topic
Conclusion
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