Abstract

BackgroundThe ParaHox genes play an integral role in the anterior-posterior (A-P) patterning of the nervous system and gut of most animals. The ParaHox cluster is an ideal system in which to study the evolution and regulation of developmental genes and gene clusters, as it displays similar regulatory phenomena to its sister cluster, the Hox cluster, but offers a much simpler system with only three genes.ResultsUsing Ciona intestinalis transgenics, we isolated a regulatory element upstream of Branchiostoma floridae Gsx that drives expression within the central nervous system of Ciona embryos. The minimal amphioxus enhancer region required to drive CNS expression has been identified, along with surrounding sequence that increases the efficiency of reporter expression throughout the Ciona CNS. TCF/Lef binding sites were identified and mutagenized and found to be required to drive the CNS expression. Also, individual contributions of TCF/Lef sites varied across the regulatory region, revealing a partial division of function across the Bf-Gsx-Up regulatory element. Finally, when all TCF/Lef binding sites are mutated CNS expression is not only abolished, but a latent repressive function is also unmasked.ConclusionsWe have identified a B. floridae Gsx upstream regulatory element that drives CNS expression within transgenic Ciona intestinalis, and have shown that this CNS expression is dependent upon TCF/Lef binding sites. We examine the evolutionary and developmental implications of these results, and discuss the possibility of TCF/Lef not only as a regulator of chordate Gsx, but as a deeply conserved regulatory factor controlling all three ParaHox genes across the Metazoa.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-016-0614-3) contains supplementary material, which is available to authorized users.

Highlights

  • The ParaHox genes play an integral role in the anterior-posterior (A-P) patterning of the nervous system and gut of most animals

  • Using deletion analysis along with mutagenesis of specific transcription factor binding sites, we show that TCF/Lef sites are crucial to the function of this amphioxus regulatory element within the C. intestinalis reporter system, driving expression in the central nervous system

  • It can be concluded that Bf-Gsx-Up1c, a region of 215 bp (−236 to −21 bp from the translational start site), is the minimal regulatory region required for nerve cord expression in C. intestinalis embryos

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Summary

Introduction

The ParaHox genes play an integral role in the anterior-posterior (A-P) patterning of the nervous system and gut of most animals. The ParaHox cluster is an ideal system in which to study the evolution and regulation of developmental genes and gene clusters, as it displays similar regulatory phenomena to its sister cluster, the Hox cluster, but offers a much simpler system with only three genes. The Hox/ParaHox genes are important components of animal development with widespread roles in the evolution of body plans and morphology, as well as being prominent systems in studies of the regulation of developmental control genes. Whilst most research focuses on the Hox genes, the ParaHox genes potentially have similar importance in the evolution of development. The ParaHox cluster is the evolutionary sister to the more intensively studied Hox gene cluster [1] and the two have clear similarities in the way that they are regulated. Studies of retinoic acid (RA) signalling across the two clusters have provided intriguing evidence towards this [4, 5], and it is likely that this pathway is working in conjunction with the modification of chromatin between active and inactive

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