Abstract

Tautomerism of nucleic acid (NA) bases is a crucial factor for the maintenance and translation of genetic information in organisms. Only canonical tautomers of NA bases can form hydrogen-bonded complexes with their natural counterparts. On the other hand, rare tautomers of nucleobases have been proposed to be involved in processes catalysed by NA enzymes. Isocytosine, which can be considered as a structural fragment of guanine, is known to have two stable tautomers both in solution and solid states. The tautomer equilibrium of isocytosine contrasts with the remarkable stability of the canonical tautomer of guanine. This paper investigates the factors contributing to the stability of the canonical tautomer of guanine by a combination of NMR experiments and theoretical calculations. The electronic effects of substituents on the stability of the rare tautomers of isocytosine and guanine derivatives are studied by density functional theory (DFT) calculations. Selected derivatives are studied by variable-temperature NMR spectroscopy. Rare tautomers can be stabilised in solution by intermolecular hydrogen-bonding interactions with suitable partners. These intermolecular interactions give rise to characteristic signals in proton NMR spectra, which make it possible to undoubtedly confirm the presence of a rare tautomer.

Highlights

  • Nucleic acid bases are responsible for maintaining and translating genetic information in organisms.Hydrogen bonding is the key interaction for the recognition of nucleobases during the replication and translation processes.In their seminal work, Watson and Crick emphasised the importance of the tautomerism of nucleic acid (NA) bases for DNA structures; only canonical tautomers of NA bases can form hydrogen-bonded complexes with their natural counterparts [1]

  • We have recently demonstrated that the formation of an intermolecular complex with a suitable hydrogen-bonding partner can stabilise a selected isocytosine tautomer [24]

  • We have studied the tautomeric equilibria of isocytosine and guanine derivatives

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Summary

Introduction

Hydrogen bonding is the key interaction for the recognition of nucleobases during the replication and translation processes. In their seminal work, Watson and Crick emphasised the importance of the tautomerism of nucleic acid (NA) bases for DNA structures; only canonical tautomers of NA bases can form hydrogen-bonded complexes with their natural counterparts [1]. Tautomeric modifications of DNA bases are, undesirable, as they can lead to errors in replication and transcription [2,3,4,5]. Modifications of tautomeric forms have been speculated to play an important role in the catalysis and binding by RNA enzymes and aptamers [6]

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