Abstract

The eukaryotic RNA exosome is an essential and conserved protein complex that can degrade or process RNA substrates in the 3'-to-5' direction. Since its discovery nearly two decades ago, studies have focused on determining how the exosome, along with associated cofactors, achieves the demanding task of targeting particular RNAs for degradation and/or processing in both the nucleus and cytoplasm. In this review, we highlight recent advances that have illuminated roles for the RNA exosome and its cofactors in specific biological pathways, alongside studies that attempted to dissect these activities through structural and biochemical characterization of nuclear and cytoplasmic RNA exosome complexes.

Highlights

  • Nuclear and cytoplasmic forms of the RNA exosome are defined by unique subunit compositions that interact with distinct cofactors in these subcellular compartments (Table 1)

  • Redundant with cytoplasmic 5′-to-3′ decay pathways (Anderson and Parker 1998), Exo10Dis3 contributes to translation-dependent mRNA surveillance pathways such as nonstop decay (NSD), nonsense-mediated decay (NMD), and no-go decay (NGD)

  • While dis3 alleles that disrupt its endo activity bear few phenotypic defects, mutations that disrupt its exo activity result in slow growth, and mutations that disrupt both activities result in synthetic growth defects or inviability (Lebreton et al 2008)

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Summary

Ski complex TRAMP complex

Ski Rrp Rrp Rrp, Ski Rrp Mtr Rrp Rrp Rrp, PM/Scl-75 Rrp, PM/Scl-100 Dis, Rrp. This review focuses on recent developments pertaining to the diverse biological functions of the exosome and our current understanding of how its structure and biochemical activities enable it to achieve these functions. This will include a brief survey of newly uncovered biological roles for the RNA exosome as well as an overview of our current knowledge for the structural basis of interactions between exosomes, RNA substrates, and cofactors that influence its processing and/or degradation activities

The RNA exosome and its roles in cellular homeostasis
Proliferation and differentiation
Viral defense
RNA exosome structure and activities and RNA paths to enzymatic subunits
RNA exosome core and catalytic subunits
TRAMP and Ski complexes
The TRAMP complex
The Ski complex
Targeting RNAs to the exosome and associated complexes
Conclusions and future challenges
Findings
Creative Commons
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