Abstract

Antimicrobial peptides (AMPs) are host-encoded antibiotics that combat invading microorganisms. These short, cationic peptides have been implicated in many biological processes, primarily involving innate immunity. In vitro studies have shown AMPs kill bacteria and fungi at physiological concentrations, but little validation has been done in vivo. We utilized CRISPR gene editing to delete all known immune-inducible AMPs of Drosophila, namely: 4 Attacins, 4 Cecropins, 2 Diptericins, Drosocin, Drosomycin, Metchnikowin and Defensin. Using individual and multiple knockouts, including flies lacking all 14 AMP genes, we characterize the in vivo function of individual and groups of AMPs against diverse bacterial and fungal pathogens. We found that Drosophila AMPs act primarily against Gram-negative bacteria and fungi, contributing either additively or synergistically. We also describe remarkable specificity wherein certain AMPs contribute the bulk of microbicidal activity against specific pathogens, providing functional demonstrations of highly specific AMP-pathogen interactions in an in vivo setting.

Highlights

  • While innate immune mechanisms were neglected during the decades where adaptive immunity captured most of the attention, they have become central to our understanding of immunology

  • All mutations/deletions were made using the CRISPR editing approach with the exception of Attacin C, which was disrupted by insertion of a Minos transposable element (Bellen et al, 2011), and the Drosomycin and Metchnikowin deletions generated by homologous recombination (Figure 1A and Figure 1—figure supplement 1)

  • Despite the recent emphasis on innate immunity, little is known on how immune effectors contribute individually or collectively to host defence, exemplified by the lack of in depth in vivo functional characterization of Drosophila Antimicrobial peptides (AMPs)

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Summary

Introduction

While innate immune mechanisms were neglected during the decades where adaptive immunity captured most of the attention, they have become central to our understanding of immunology. Recent emphasis on innate immunity has, mostly focused on the first two phases of the immune response: microbial recognition and associated downstream signaling pathways. How innate immune effectors individually or collectively contribute to host resistance has not been investigated to the same extent. The existence of multiple effectors that redundantly contribute to host resistance has hampered their functional characterization by genetic approaches (Lemaitre and Hoffmann, 2007). The single mutation methodology that still prevails today has obvious limits in the study of immune effectors, which often belong to large gene families. The key parameters that influence host survival associated with a successful immune response are not well characterized. We harnessed the power of the CRISPR gene editing approach to study the function of Drosophila antimicrobial peptides in host defence both individually and collectively.

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