Abstract

It has long been claimed that the mitochondrial genetic code possesses more symmetries than the Standard Genetic Code (SGC). To test this claim, the symmetrical structure of the SGC is compared with noncanonical genetic codes. We analyzed the symmetries of the graphs of codons and their respective phenotypic graph representation spanned by the RNY (R purines, Y pyrimidines, and N any of them) code, two RNA Extended codes, the SGC, as well as three different mitochondrial genetic codes from yeast, invertebrates, and vertebrates. The symmetry groups of the SGC and their corresponding phenotypic graphs of amino acids expose the evolvability of the SGC. Indeed, the analyzed mitochondrial genetic codes are more symmetrical than the SGC.

Highlights

  • The discovery of the structure of DNA [1] and the decipherment of the Standard Genetic Code (SGC) [2,3] are landmarks of scientific achievements

  • We examine how the SGC has led to new genetic codes by determining their symmetries

  • We analyze the symmetries of the graphs of codons and their respective phenotypic graph representation spanned by the RNY code, the two RNA Extended codes, and the complete code of 64 codons that comprises the SGC, as well as three different mitochondrial genetic codes from yeast, invertebrates, and vertebrates

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Summary

Introduction

The discovery of the structure of DNA [1] and the decipherment of the Standard Genetic Code (SGC) [2,3] are landmarks of scientific achievements. The elucidation of the origin and evolution of the SGC is a central problem in evolutionary biology. The SGC is nearly universal, with some minor exceptions. Crick proposed the frozen accident hypothesis to account for the universality of the SGC [4]. The universality of the SGC immediately implied a Last Universal Common Ancestor (LUCA). Evolution has to do with preserving or fixing some necessary properties of life

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