Abstract

# Background Bacterial meningitis (BM) is a significant cause of mortality in children; with deaths from BM in children aged \<5 years in Angola estimated at 2395 in 2015. *Streptococcus pneumoniae* is one causative agent for BM in young children, and Angola introduced routine immunization with a 13-valent pneumococcal vaccine (PCV13) in 2012. This study assessed BM etiology in children in Angola following introduction of PCV13. # Methods This was a prospective, observational, single-site study conducted from October 2016 to October 2017. Children aged 3 months--15 years were included. Suspected meningitis was defined according to the World Health Organization (WHO) guidelines. Detection and characterization of *S. pneumoniae, Neisseria meningitidis,* and *Haemophilus influenzae* was carried out using polymerase chain reaction (PCR) assay. # Results A total of 1732 patients were enrolled and bacteria were detected in 137 cerebrospinal fluid samples. The most common pathogen detected was *S. pneumoniae* (43/137, 31.4%), followed by *H. influenzae* (21/137, 15.3%) and *N. meningitidis* (16/137, 11.7%) with 48% (10/21) of *S. pneumoniae* cases caused by PCV13 vaccine serotypes. *N. meningitidis* isolates were serogroups B, C and Y, and 67% (10/15) of *H. influenzae* isolates were type b. In patients with meningitis and a pathogen detected, mortality (38% (50/132) vs. 12% (101/818), *P*\<0.0001) and severe neurological sequelae (15% (10/67) vs. 5% (35/667), *P*=0.002) were higher than in those without pathogens detected. # Conclusions These data highlight that strategies to reduce the incidence of BM caused by *N. meningitidis, S. pneumoniae* and *H. influenzae* must continue to reduce mortality and morbidity.

Highlights

  • Bacterial meningitis (BM) is a significant cause of mortality in children; with deaths from BM in children aged

  • The most common pathogen detected was S. pneumoniae (43/137, 31.4%), followed by H. influenzae (21/137, 15.3%) and N. meningitidis (16/137, 11.7%) with 48% (10/21) of S. pneumoniae cases caused by PCV13 vaccine serotypes

  • In patients with meningitis and a pathogen detected, mortality (38% (50/132) vs. 12% (101/818), P

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Summary

Methods

This was a prospective, observational, single-site study conducted from October 2016 to October 2017. Detection and characterization of S. pneumoniae, Neisseria meningitidis, and Haemophilus influenzae was carried out using polymerase chain reaction (PCR) assay. This was a prospective, observational, single site, descriptive study conducted between 21 October 2016 and 20 October 2017 at Hospital Pediátrico David Bernardino (HPDB) in Luanda, Angola, a 300-bed pediatric referral and teaching hospital. The molecular detection of meningitis pathogens targeted the ctrA, lytA and hpd genes for N. meningitidis, S. pneumoniae and H. influenzae respectively, using a multiplex real-time PCR assay as previously described (up to and including cycle threshold [Ct]=39). CSF samples positive for ctrA or hpd targets (up to and including Ct=39) underwent serogrouping/typing: ctrA positive samples were confirmed using two multiplex reactions for detection of serogroups A, W, X, B, C, and Y 14, and the serotypes in hpd positive samples were determined using three multiplex reactions. 15, 16 lytA-positive samples wdeitthecCtitnvgal3u8esse≤ro3t5ypweesr.e17t,e1s8ted by eight multiplex reactions

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